Celi015145.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026069.1:20271469-20274626[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00051 0.04 15.0 0.3 1 23 8 30 8 30 0.96 2 22 1.8 1.4e+02 3.8 2.2 3 21 52 70 50 71 0.94 3 22 3.6e-05 0.0028 18.6 0.8 1 23 91 113 91 113 0.97 4 22 5.5 4.3e+02 2.3 1.8 5 23 121 140 118 140 0.93 5 22 5.9e-05 0.0046 17.9 0.2 1 23 219 241 219 241 0.96 6 22 0.00031 0.024 15.7 3.2 1 23 249 271 249 271 0.98 7 22 1.9e-06 0.00015 22.7 0.3 1 23 277 299 277 299 0.98 8 22 0.00061 0.047 14.8 1.4 1 23 305 327 305 327 0.97 9 22 2.3e-06 0.00018 22.4 1.9 1 23 333 355 333 355 0.98 10 22 1e-06 7.9e-05 23.5 1.0 1 23 361 383 361 383 0.97 11 22 3.1e-06 0.00024 22.0 1.6 1 23 389 411 389 411 0.99 12 22 0.018 1.4 10.2 0.2 2 23 417 439 416 439 0.95 13 22 0.0041 0.32 12.2 2.9 1 23 448 471 448 471 0.96 14 22 3.9e-05 0.0031 18.5 0.1 1 23 506 529 506 529 0.97 15 22 0.011 0.85 10.8 2.3 1 23 537 560 537 560 0.95 16 22 0.017 1.3 10.2 0.4 2 20 564 582 563 584 0.93 17 22 0.0014 0.11 13.6 8.8 2 23 588 609 588 610 0.96 18 22 0.00089 0.069 14.2 1.6 1 23 619 641 619 641 0.97 19 22 0.00088 0.068 14.3 0.8 2 20 649 667 648 671 0.93 20 22 0.0074 0.58 11.3 0.5 2 21 676 695 675 696 0.94 21 22 0.00052 0.04 15.0 0.1 2 23 704 725 703 725 0.96 22 22 6.1e-05 0.0047 17.9 1.9 2 23 731 753 731 753 0.97
Sequence Information
- Coding Sequence
- ATGGAACTGAGTAAGCCAGTTTTTCCATGCAAAGCATGTCTAAAGACATTTTCCAAACTAACTGACCTGGAAAAACACATTGAATGGCATAGCTTGCAGACAAAACATATGCAAAGTTCGTTTGTAAAGTTGGAACATGTCATCATATTTGGATGTGAATTTTGTACAAGAGGTTTCTTACATCGTAACAAATTGAAACAACATCAACAGAAATATTTTAAAGGACTTATTACAAATTCTGTGGACAATAATAATCACTTTGAAAAGCCCTACAAATGTCAAGACTGTGACTTGAGGTTTGTTAAGAAGAGTACGCTTGAAACTCACTCCATTGTCCACAAGCCGTTTGCACATACATGCGAGTGTGGCATCGGTTACTACAAGAGGTGTGACCTGGATAGCCATCGGAGGCTAGTACACCCACTTTTGAAATCGGTCCAGACCACAGTACCTAAACTCAAGGAAGAAGTAATCATCAAATACAAAACAGATTCGGAAGCCGAAGGCTCAGATATAGAAGATGATAACAAACCGAAGAGGAAAGTAAGACCAAGACTAAAGGCTAAACTAACATATAGAAAACCTAAAAAGGAAAAACAAACTTCAAAAAAAAGTTACGAAAATTTGGCGGTTGAAAGAGATGACAATGGAAAATATAAATGTCCGGTATGCTCAAAACCATATGGAAGTAAAAAGACTTTAAATATACACATGGGTGAGCACAATACGCAACCAGAAGAGATGCACAAGTGCAATGAATGCCCAAAGGAGTTTTCAAGTGGAGAAAAGTTATATCAACATAAGCGAAGACATGCAAATTTTAAAAGCTTTCCCTGCAGTGTATGCCGCAAAGCATTTAACAGCAAAGTGGGTTTACAAACCCACATGAGGGTTCACACCGGGGAAAAACCGTTTGCCTGTGATTTGTGCCCTGCAAAATTTTCTCAAACTGGAACACTCAAACACCATAAACTGACACATACTGGGGTGAAAAACTTTGAATGTACAGTGTGTAAAAAGTATTTTTACACAAAGGATCAATTGGGTCGTCACATGCGGATTCATACTGGGGAAAAGCCGTACGATTGCAAGTATTGTGGGAAGAGTTTTGCTGATTATTCAGCGTACAAACGTCACGAGCTTACCCACACTGGACTGAAGCCCTACCAGTGCAAATTATGTCCGAAAGCCTTCTGCGACCCTAGCGCACGATTCGCCCACATGCGCCGCCATCAGGGGTGGACCGTCCCCTGCCCCGCTTGCTATAGAACATTCACCGACAACGCAGGAATGCGCCTCCACTTCAAACGAGAGCACCAAATAGCAAACGAAGTAGAAAAATTTGAATGTGATTACTGTCATAAAAGCTTTTTGTTCAAACAATATCTCGTTATACATATTAAGAATATGCACTTGTACCCCGAAGGCTTCATCAACTGCAAATACTGTGAGAAAAAATTGTGTCCGAGAAGTCTTAACAACCACATACAGCATATGCATCTTAAAAATTACAGGTTTGAATGCCCGATATGCGGACAAAGGTTTGCACAGAAAATCCCAATGAAAAACCACATTATGAGAATGCATGGTAAAACAAAGGAGAGAAATTACGAATGTGATCATTGCCATAAAACTTACTTAATGAAGATAGATTTAAGCAGACACATAATAAACGTCCATATGGGTATTCAGTGTCAGTTATGCAAGAAACCTTTCTCCACAACTCTCAAACTGAAGGAACACAAATTAGAAGGTTGCAGAAAATGCTCCGTATGCGGACTTACGTTCCATGTTAAGCATCATTTGAGAGACCACATGAACACACACCATTTGCCGAAAAGTGAGCGGCCAAGGTATGAATGCGCTCATTGTTGGAAACAGTTTCCAGTGAGACAGACACTAGTCCGGCACCTAAAATTCCACTATGCGGTGAATCTCAAATTAACCTGCGATCATTGTAATGAGACATTCAGCAGTAAGGTGGCGATTAGACGTCACATTTGGAGCAGGCACATGGTGAGTCTGTACTGCAATATTTGCTTGAAGATGTTCTATAACGATTCTGAGTTTAAACAACACAAGCGCGCTGGCTGCCAAAAGCGCATAATACCTTGCGACTTTTGTGACTTGACATTTTCCGCCGCTAACCTCCTCAATTCGCATTTAAGAGTTCACGGGCCGAGGATACGAAAGTGTGCCCATTGCAGAGCGTCATATAAAGATAAATCTAGTTTAATAAGACATTTAAGATCAGCACATGGGTTTTAG
- Protein Sequence
- MELSKPVFPCKACLKTFSKLTDLEKHIEWHSLQTKHMQSSFVKLEHVIIFGCEFCTRGFLHRNKLKQHQQKYFKGLITNSVDNNNHFEKPYKCQDCDLRFVKKSTLETHSIVHKPFAHTCECGIGYYKRCDLDSHRRLVHPLLKSVQTTVPKLKEEVIIKYKTDSEAEGSDIEDDNKPKRKVRPRLKAKLTYRKPKKEKQTSKKSYENLAVERDDNGKYKCPVCSKPYGSKKTLNIHMGEHNTQPEEMHKCNECPKEFSSGEKLYQHKRRHANFKSFPCSVCRKAFNSKVGLQTHMRVHTGEKPFACDLCPAKFSQTGTLKHHKLTHTGVKNFECTVCKKYFYTKDQLGRHMRIHTGEKPYDCKYCGKSFADYSAYKRHELTHTGLKPYQCKLCPKAFCDPSARFAHMRRHQGWTVPCPACYRTFTDNAGMRLHFKREHQIANEVEKFECDYCHKSFLFKQYLVIHIKNMHLYPEGFINCKYCEKKLCPRSLNNHIQHMHLKNYRFECPICGQRFAQKIPMKNHIMRMHGKTKERNYECDHCHKTYLMKIDLSRHIINVHMGIQCQLCKKPFSTTLKLKEHKLEGCRKCSVCGLTFHVKHHLRDHMNTHHLPKSERPRYECAHCWKQFPVRQTLVRHLKFHYAVNLKLTCDHCNETFSSKVAIRRHIWSRHMVSLYCNICLKMFYNDSEFKQHKRAGCQKRIIPCDFCDLTFSAANLLNSHLRVHGPRIRKCAHCRASYKDKSSLIRHLRSAHGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -