Celi006395.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crocallis elinguaria
Gene Symbol
-
Assembly
GCA_907269065.1
Location
OU026074.1:325683-327425[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.004 0.31 12.2 0.6 6 23 2 19 1 19 0.96
2 21 0.00017 0.013 16.5 4.8 1 23 25 47 25 47 0.98
3 21 6.7e-06 0.00052 20.9 0.5 1 23 53 75 53 75 0.99
4 21 0.00027 0.021 15.9 1.7 1 23 81 103 81 103 0.98
5 21 0.1 7.8 7.8 0.3 11 23 119 131 109 131 0.83
6 21 6e-05 0.0047 17.9 2.6 1 23 137 159 137 159 0.98
7 21 0.00012 0.0095 17.0 5.2 1 23 165 187 165 187 0.98
8 21 4.8e-05 0.0037 18.2 1.4 1 23 193 215 193 215 0.99
9 21 6e-05 0.0047 17.9 2.6 1 23 221 243 221 243 0.98
10 21 2.8e-05 0.0022 19.0 1.7 1 23 249 271 249 271 0.98
11 21 6e-05 0.0047 17.9 2.6 1 23 277 299 277 299 0.98
12 21 8.1e-05 0.0063 17.5 1.7 1 23 305 327 305 327 0.98
13 21 8.1e-05 0.0063 17.5 1.7 1 23 333 355 333 355 0.98
14 21 5.4e-05 0.0042 18.1 3.0 1 23 361 383 361 383 0.98
15 21 0.0001 0.008 17.2 3.3 1 23 389 411 389 411 0.98
16 21 1.6e-05 0.0012 19.8 1.7 1 23 417 439 417 439 0.99
17 21 6.7e-06 0.00052 20.9 0.5 1 23 445 467 445 467 0.99
18 21 2.7e-05 0.0021 19.0 1.5 1 23 473 495 473 495 0.98
19 21 5.5e-06 0.00043 21.2 2.8 1 23 501 523 501 523 0.99
20 21 6.3e-06 0.00049 21.0 0.5 1 23 529 551 529 551 0.99
21 21 4.2e-06 0.00033 21.6 0.5 1 23 557 579 557 579 0.99

Sequence Information

Coding Sequence
ATGTGTGATTACAAATCTGTACGAGCAAAAACTTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACGAACAGATCACTTAAAGTTACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTATACAAGCAGGCAGTTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGATAAGTTAAAGTTACACGTGAGAACACACATTGGAGAGAAGCCCCATGAATGTACCATGTGGGATTACAAATCTATATATGCAGGTAATTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCGCCATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAAATACTTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACGAACAGATCACTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTAGAAGCAGTACATTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAAATACTTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTATATATGCAGGTAATTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCGCCATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAAATACTTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTATATATGCAGGTAGTTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTATATATGCAGGTAGTTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAAAAACTTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACGAACAGATTACTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAACAGATTACTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTATACAAGCAGGTAGTTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGGAAGTTTAAAGTTACACATGAGAACACACACTGGATATAAGTCCTATGAATGTACCATATGTGATTACAAATCTGTACGAACAGATCACTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGGAAGTTTAAAGTTACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACAAGCAGGTAATTTAAAGTCACACATGAGATCACACACTTGA
Protein Sequence
MCDYKSVRAKTLKSHMRTHTGEKPHECTMCDYKSVRTDHLKLHMRTHTGEKPYECTMCDYKSIQAGSLKSHMRTHTGEKPHECTMCDYKSVRADKLKLHVRTHIGEKPHECTMWDYKSIYAGNLKSHMRTHTGEKRHECTMCDYKSVRANTLKSHMRTHTGEKPHECTMCDYKSVRTDHLKSHMRTHTGEKPYECTMCDYKSVEAVHLKSHMRTHTGEKPHECTMCDYKSVRANTLKSHMRTHTGEKPHECTMCDYKSIYAGNLKSHMRTHTGEKRHECTMCDYKSVRANTLKSHMRTHTGEKPHECTMCDYKSIYAGSLKSHMRTHTGEKPHECTMCDYKSIYAGSLKSHMRTHTGEKPHECTMCDYKSVRAKTLKSHMRTHTGEKPHECTMCDYKSVRTDYLKSHMRTHTGEKPYECTMCDYKSVRTDYLKSHMRTHTGEKPYECTMCDYKSIQAGSLKSHMRTHTGEKPHECTMCDYKSVRAGSLKLHMRTHTGYKSYECTICDYKSVRTDHLKSHMRTHTGEKPYECTMCDYKSVRAGSLKLHMRTHTGEKPYECTMCDYKSVQAGNLKSHMRSHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-