Celi006532.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crocallis elinguaria
Gene Symbol
-
Assembly
GCA_907269065.1
Location
OU026074.1:1819508-1821142[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 1.5e-05 0.0011 19.9 2.2 1 23 8 30 8 30 0.98
2 19 3e-05 0.0023 18.9 2.2 1 23 36 58 36 58 0.98
3 19 0.00011 0.0089 17.0 2.8 1 23 64 86 64 86 0.98
4 19 0.001 0.077 14.1 0.3 1 23 92 114 92 114 0.96
5 19 0.00018 0.014 16.4 0.6 1 23 120 142 120 142 0.99
6 19 2.3e-05 0.0018 19.2 1.5 1 23 148 170 148 170 0.99
7 19 1.5e-05 0.0012 19.8 2.6 1 23 176 198 176 198 0.99
8 19 4.8e-05 0.0037 18.2 2.8 1 23 204 226 204 226 0.99
9 19 0.00048 0.037 15.1 0.2 1 23 232 254 232 254 0.96
10 19 2.8e-05 0.0022 19.0 3.3 1 23 260 282 260 282 0.99
11 19 1.3 97 4.3 0.5 14 23 301 310 294 310 0.86
12 19 5.6e-06 0.00043 21.2 0.4 1 23 316 338 316 338 0.99
13 19 3.7e-05 0.0029 18.6 0.6 1 23 344 366 344 366 0.98
14 19 1e-05 0.00078 20.4 0.4 1 23 372 394 372 394 0.99
15 19 2.4e-06 0.00018 22.3 0.9 1 23 400 422 400 422 0.99
16 19 5.6e-06 0.00043 21.2 0.4 1 23 428 450 428 450 0.99
17 19 9.6e-06 0.00075 20.4 0.7 1 23 456 478 456 478 0.99
18 19 3.2e-07 2.5e-05 25.1 2.4 1 23 484 506 484 506 0.99
19 19 1.1e-07 8.6e-06 26.5 3.4 1 23 512 534 512 534 0.99

Sequence Information

Coding Sequence
ATGGACTCTGGAAAAAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTAAGAAAAGGTAATTTAAATGAACACATGAAAACACACACTGGAGAAAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTAAGAAAAGATAATTTAAATGGACACATGAAAACACACATTGGAGAAAAGTCCCATGAATGTACCATGTGTGATTACAAATCTGTACATGCAGGAAGTTTAACGATGCACATGAGGACACACACTGGAGAGAAGCCGTATGAATGTATCATGTGTGATTACAAATCTGTGCGAGCAGGTGATTTAAAGTTACACATGAGAAAACACACTGGAGAAAAGCCCTATAAATGTACCATGTGTGATTACAAATCTGCATATGCAGGAAGTGTAACGATGCACATGAGGACACACAGTGGAGAGAAGCCGTATGAATGTACCATGTGTCATTATAAATCTGTGCAAGCAGGTGAATTAAAGTTACACATGAGAACACACACTGGAGAGAAGCCCTATGAATGTAACATGTGTGATTACAAATCTGCAAGAAAATGTGATTTAACGATACACATGAGGACACACACTGGAGAGAAGCCGTATGAATGCACCATGTGTGATTATAAATCTGTGCGATCATGTGATTTAACGTTACACATGAGAACACACACTGGAGAGAAGCCGTATGAATGCATCATGTGTGATTATAAATCTGTGCGAGCAGGTGATTTAAAGTTACACATGAGAACACACACTGGAGAGAAGCCCTATGAATGTAACATTTGTGATTACAAATCTGTAAGAAAATGTAATTTAAATGAACACATGAAAAAACACATTGGCAAAAAGCCCCATGAATGTACCATGTATGATTACAAATCTGTACATGGCAGAAGTTTAACGATACACATGAGGACACACACTGGCGAGAAGCTCTATGAATGTACCATGTGTGATTATAAATCTGTGCGAGCAGGTGAATTAAAGTTGCACATGAGAACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTATACGTGCAGTAAATTTAACGACACACATGAGTAAACACACTGGAGAAAAGCCCTATGAATGTACCATGTGTGATTATAAATCTGTGCGAGCAGGTGATTTAAAGTTACACATGAGAAGACACACTGGAGAGAAGGCCTATGAATGTAACATGTGTGATTACAAATCTGTACATGCAGGAAATTTAACGGTACACATGAGGACACACACTGGAGAGAAGCCGTATGAATGCACCATGTGTGATTATAAATCTGTGCGAGCAGGTGAATTAAAGTTACACATGAGAACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTATACGTGCAGTAAATTTAATGACACACATGAGAAAACACACTGGAGAAAAGCCCTATGAATGTACCATGTGTGATTATAAATTTGTAAATAAAGATTATTTAAAAAAACACATGATGAAGCACACTGGAGAGAAGCCATATGAATGTACCATGTGTGATTATAAATTTGTAAGAAAAGATCATTTAGAAAGACACTTGAGAACACACACTGGAGAAAAGCCCTATGAATGTACTATGTGA
Protein Sequence
MDSGKKPHECTMCDYKSVRKGNLNEHMKTHTGEKPHECTMCDYKSVRKDNLNGHMKTHIGEKSHECTMCDYKSVHAGSLTMHMRTHTGEKPYECIMCDYKSVRAGDLKLHMRKHTGEKPYKCTMCDYKSAYAGSVTMHMRTHSGEKPYECTMCHYKSVQAGELKLHMRTHTGEKPYECNMCDYKSARKCDLTIHMRTHTGEKPYECTMCDYKSVRSCDLTLHMRTHTGEKPYECIMCDYKSVRAGDLKLHMRTHTGEKPYECNICDYKSVRKCNLNEHMKKHIGKKPHECTMYDYKSVHGRSLTIHMRTHTGEKLYECTMCDYKSVRAGELKLHMRTHTGEKPYECTMCDYKSIRAVNLTTHMSKHTGEKPYECTMCDYKSVRAGDLKLHMRRHTGEKAYECNMCDYKSVHAGNLTVHMRTHTGEKPYECTMCDYKSVRAGELKLHMRTHTGEKPYECTMCDYKSIRAVNLMTHMRKHTGEKPYECTMCDYKFVNKDYLKKHMMKHTGEKPYECTMCDYKFVRKDHLERHLRTHTGEKPYECTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-