Celi006393.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crocallis elinguaria
Gene Symbol
-
Assembly
GCA_907269065.1
Location
OU026074.1:303271-313022[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.62 49 5.3 2.0 13 23 135 145 133 145 0.91
2 24 0.00025 0.02 16.0 0.4 1 23 151 173 151 173 0.99
3 24 1.5e-05 0.0012 19.8 2.6 1 23 179 201 179 201 0.98
4 24 1e-05 0.00081 20.3 0.5 1 23 207 229 207 229 0.99
5 24 0.00015 0.011 16.7 2.2 1 23 235 257 235 257 0.98
6 24 1.4e-05 0.0011 19.9 0.8 1 23 263 285 263 285 0.99
7 24 1e-05 0.00081 20.3 0.5 1 23 291 313 291 313 0.99
8 24 0.00012 0.009 17.0 1.7 1 23 319 341 319 341 0.98
9 24 0.00017 0.013 16.5 0.7 1 23 347 370 347 370 0.97
10 24 1.3e-06 0.0001 23.1 0.8 1 23 376 398 376 398 0.99
11 24 0.00028 0.022 15.8 0.9 1 23 404 426 404 426 0.97
12 24 0.00024 0.019 16.0 0.4 1 23 432 454 432 454 0.99
13 24 0.00078 0.061 14.4 1.8 1 23 460 482 460 482 0.98
14 24 0.00044 0.034 15.2 5.6 1 23 488 510 488 510 0.98
15 24 5.5e-06 0.00043 21.2 0.6 1 23 516 538 516 538 0.99
16 24 1.1e-05 0.00086 20.2 2.2 1 23 544 566 544 566 0.99
17 24 3.2e-05 0.0025 18.8 1.9 1 23 572 594 572 594 0.99
18 24 5.5e-06 0.00043 21.2 0.6 1 23 600 622 600 622 0.99
19 24 7.9e-06 0.00062 20.7 2.8 1 23 628 650 628 650 0.99
20 24 1e-05 0.0008 20.3 2.8 1 23 656 678 656 678 0.99
21 24 5.6e-05 0.0044 18.0 3.1 1 23 684 706 684 706 0.98
22 24 4.9e-05 0.0038 18.2 0.3 1 23 712 734 712 734 0.99
23 24 0.00013 0.01 16.8 0.6 1 23 740 762 740 762 0.97
24 24 1.2e-05 0.00093 20.1 1.5 1 23 768 790 768 790 0.99

Sequence Information

Coding Sequence
ATGAAACATTGTCTAGACCAAGACAGTGCTGAAGCATCAACGTCATGTCGCGGTGACGTCACGGCGCCCCCTTCGCGTCGTGGAGATGTCACGCCGCGCCGTGCCAGCGACGTCGCGGTGCCCTGTGAAGAGGATGTTGCTGCCGGTGCTGCTCCGTCGGTCTTCGAGTTGGCTGCGAGGACGCCGCCGTGTCAGGAGAGGCCGTCTTCGGCGCTGCGTGAAAAGCAGCCCTTCCGCCCTTGCGTGACGAAGCACGGTCACTCGTGCTCGGCTCCGCAGCTTCGGCTTTGGTCGCCTTCGGCGACCAGCCTCCGCCGCTCCACCTCGCACGGTTCCCGTGCTTCGTCACGGCGGGCGAGGGCTGCTCTTCCCTCCGCGCCTCCGCCTTTTTATATACACTCTAGGGGTAATTTAAAGTCACACATGAGAACACACAGTGGAGAGAAGCCCTATGAGTGTACCATGTGTGATTACAAATCTATACAAGCAGGGGTTTTAAAGTCGCACATGAAAACTCACACTGGAGAAAAGCCCCATGTGTGTACCATCTGTGATTACAAATCTGTACATGCAGGTAATTTAAAGTCACACATGAGAACACACAGTGGAGGGAAGCCCTATGAGTGTACCATGTGTGATTACAAATCTGTACGAGCAGGGGATTTAAAGTCGCACATGAAAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTATAAATCTGTATATGCAAGAGATTTAAAGTCACACATGAGAACACACAGTGGAGAGAAGCCCTATGAGTGTACCATGTGTGATTACAAATCTATACAAGCAAGAGAATTAAAGTCACACATGAGAACACACAGTGGAGAGAAGCCCTATGAGTGTACCATGTGTGATTACAAATCTGTACGAGCAGGGGATTTAAAGTCGCACATGAAAACACACACTAGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTATATATGCAGGTAGTTTAAAGTCACACATGAGAACACACACTGGAGAGAAACCCCATGAATGTACCATGTGTGATTACAAATCTATACAAGCAGGTAATTTAAAGTTACACATGATGAGGATACACAGTAGAGAAAAACCCTATGAATGTAGCATGTGTGATTACAAATCTGTACGAGCAGATAACTTAAAGTCACACATGAGGACACACACTGGAGAAAAGCCCCATGTGTGTACCATCTGTGATTACAAATCTATACAAGCAAGAGATTTAAAGTCACACATGGTGACACACACCGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCATATGCTTTAAAGCCACACATGAGAACACACACTGGAGAGAAACCCCATGAATGTGCCATGTGTGATTACAAATCTATATATGCATTTAGTTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTGTACATGCAGTACATTTAAAGTCACACATGAGAACACACAGTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGGAAGTTTAAAGTCACACATGAGAACACACACTGGATATAAGTCCTATGAATGTACCATATGTGATTACAAATCTGTACGAACAGATCACTTAATGTCACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACAAGCAGTACATTTAAAGTCACACATGAAAACACACACTGAATATAAGTCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGGAAGTTTAAAGTCACACATGAGAACACACACTGGATATAAGTCCTATGAATGTACCATATGTGATTACAAATCTGTACGAACAGATCACTTAAAGTCACACATGAGGACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCCCGACAAGCAGTACATTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCCTGTGTGATTACAAATCTGTACATGCAGGTAATTTAAAGTCACACATGAGAACACACAGTGGAGAGAAGCCCTATGAGTGTACCATGTGTGATTACAAATCTATACAAGCAGGGGGTTTAAAGTCGCACATGAAAACACACACTGGAGAAAAGCCCCATGTGTGTGCCATCTGTGATTACAAATCTGTACAAGCAAGAGATTTAAAGTCACACATGATGACACACACCGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAAAAACTTTAAAGTCACACATGAGGACACACACTTGA
Protein Sequence
MKHCLDQDSAEASTSCRGDVTAPPSRRGDVTPRRASDVAVPCEEDVAAGAAPSVFELAARTPPCQERPSSALREKQPFRPCVTKHGHSCSAPQLRLWSPSATSLRRSTSHGSRASSRRARAALPSAPPPFYIHSRGNLKSHMRTHSGEKPYECTMCDYKSIQAGVLKSHMKTHTGEKPHVCTICDYKSVHAGNLKSHMRTHSGGKPYECTMCDYKSVRAGDLKSHMKTHTGEKPHECTMCDYKSVYARDLKSHMRTHSGEKPYECTMCDYKSIQARELKSHMRTHSGEKPYECTMCDYKSVRAGDLKSHMKTHTREKPHECTMCDYKSIYAGSLKSHMRTHTGEKPHECTMCDYKSIQAGNLKLHMMRIHSREKPYECSMCDYKSVRADNLKSHMRTHTGEKPHVCTICDYKSIQARDLKSHMVTHTGEKPYECTMCDYKSVRAYALKPHMRTHTGEKPHECAMCDYKSIYAFSLKSHMRTHTGEKPHECTMCDYKSVHAVHLKSHMRTHSGEKPYECTMCDYKSVRAGSLKSHMRTHTGYKSYECTICDYKSVRTDHLMSHMRTHTGEKPYECTMCDYKSVQAVHLKSHMKTHTEYKSYECTMCDYKSVRAGSLKSHMRTHTGYKSYECTICDYKSVRTDHLKSHMRTHTGEKPYECTMCDYKSRQAVHLKSHMRTHTGEKPHECTLCDYKSVHAGNLKSHMRTHSGEKPYECTMCDYKSIQAGGLKSHMKTHTGEKPHVCAICDYKSVQARDLKSHMMTHTGEKPYECTMCDYKSVRAKTLKSHMRTHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-