Celi009427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Crocallis elinguaria
Gene Symbol
-
Assembly
GCA_907269065.1
Location
OU026068.1:5548356-5550389[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 4.1e-06 0.00032 21.6 0.3 1 23 10 32 10 32 0.99
2 24 0.001 0.079 14.1 0.3 1 23 38 60 38 60 0.98
3 24 8.6e-07 6.7e-05 23.7 0.9 1 23 66 88 66 88 0.99
4 24 3e-05 0.0023 18.9 1.1 1 23 94 116 94 116 0.98
5 24 4.5e-06 0.00035 21.5 3.6 1 23 122 144 122 144 0.99
6 24 0.0003 0.023 15.7 2.3 1 23 150 172 150 172 0.98
7 24 3.9e-05 0.003 18.5 1.3 1 23 178 200 178 200 0.98
8 24 4.3e-05 0.0034 18.4 1.6 1 23 206 228 206 228 0.98
9 24 6.4e-05 0.005 17.8 1.2 1 23 234 256 234 256 0.98
10 24 1.9e-05 0.0015 19.5 1.8 1 23 262 284 262 284 0.99
11 24 2.7e-05 0.0021 19.0 1.9 1 23 290 312 290 312 0.99
12 24 0.0032 0.25 12.5 2.2 1 23 318 340 318 340 0.98
13 24 2.6e-05 0.002 19.1 1.6 1 23 346 368 346 368 0.98
14 24 2.6e-05 0.002 19.1 1.6 1 23 374 396 374 396 0.98
15 24 4.3e-05 0.0034 18.4 1.6 1 23 402 424 402 424 0.98
16 24 3.2e-05 0.0024 18.8 1.4 1 23 430 452 430 452 0.96
17 24 0.0044 0.34 12.1 2.1 1 23 458 480 458 480 0.98
18 24 0.00011 0.0085 17.1 0.5 1 23 486 508 486 508 0.99
19 24 0.0027 0.21 12.7 0.1 5 23 518 536 517 536 0.96
20 24 1.2e-06 9.3e-05 23.3 0.6 1 23 542 564 542 564 0.99
21 24 5.2e-06 0.00041 21.3 0.2 1 23 570 592 570 592 0.99
22 24 4.9e-06 0.00038 21.3 2.0 1 23 598 620 598 620 0.99
23 24 1.8e-05 0.0014 19.6 1.9 1 23 626 648 626 648 0.99
24 24 2.9e-06 0.00023 22.1 2.6 1 23 654 676 654 676 0.99

Sequence Information

Coding Sequence
ATGAGAACACACACTGGAGAGAAGTCTTATGAATGTAGCATGTGTGATTACAAGTCTGTACGAGCAGGTGATTTAAAGGTACACATGAGAACACACACTGGAGAGAAGCCCTATGAGTGTACCATGTGTGATTACAAATCTATAAAAGCTGTAGGTTTAAAGTCGCACATGATAAAACACACTGGAGAGAGGCCCTATGAATGTAGTATATGTGATTACAAATCTATACGAGCATATAATTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTATACAAGCAAGTGCATTAAAGTCACACATTAGAACACACACTGGAGATAAGCCCTATGAATGTACCATATGTGATCACAAAACTGTACGAGCAGATCATTTAAAGTCACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACAATGTGTGATTACAAATCTATACAAGCAAGATATTTAAAGTCACACATGATGACACACACCGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTAAACAAGCAGATGCATTAAAGTTACACATTAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCAATACGAGCATATGCATTAAAGTTACACATGAGAACACACACTGGAGAGAAGCCCCATGAATGTACTATGTGTGATTACAAATCTGTATCAGCAGGTAATTTAAAGTCACACATGAGTACACACACTGGAGATAAGCGCTATGAATGTACCATATGTGATTACAAATCTGTCCATGCAGTACATTTAAAGATACACATGAGGATACACAGTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACAAGCAGTACATTTAAAGTCACACATGAAAACACACACTGGACAGAAGCCCCATGAATGCACAATGTGTGATTACAGATCTATACTATCAAATACTTTAAAGTTACACATGAGATCACACACCGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTAAACAAGCAGATGCATTAAAGTCACACATTAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCTAAACAAGCAGATGCATTAAAGTCACACATTAGAACACACACTGGAGAGAAGCCCCATGAATGTACCATGTGTGATTACAAATCAATACGAGCATATGCATTAAAGTTACACATGAGAACACACACTGGAGAGAAGCCACATGACTGTAGTATGTGTGATTACAAATCTGTATCAGCAGGTAATTTAAAGTCACACATGAGGACACACAATGGAGAGAAGCCCCATGAATGTACCTTATGTGATTACAGATCTATACTATCAAATACTTTAAAGTTACACATGAGATCACACACCGGAGAGAAGCCCTATGAATGTGCCATGTGTGATTACAAATCTATATATGAAGGTAGTTTAAAGACACACATGAGAACACACACTGGAGAGAAGCCCTATGATCGTACCATGTGTGATTACAAATCTGTAAATGCAGGTAATTTAAAGATACACATGAGGATACACAGTGGAGAGAAGCCGTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGATAATTTAAATTCACACATGAGAACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTAAATGCAGGTAATTTAAAGATACACATGAGGATACACAGTCGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGATCATTTAAAGTTACACATGAGAACACACACTGGAGAGAAGCCCTATGAATGTACCATGTGTGATTACAAATCTGTACGAGCAGATCATTTAAAGTCACACATGAGTACACATACTGGAGGTAAGAGCTATGAATGTACCATGTGTGATTTCAAATATGTACGAGCAGATCATTTAAAGTCACACATGAGATCACACACTTGA
Protein Sequence
MRTHTGEKSYECSMCDYKSVRAGDLKVHMRTHTGEKPYECTMCDYKSIKAVGLKSHMIKHTGERPYECSICDYKSIRAYNLKSHMRTHTGEKPHECTMCDYKSIQASALKSHIRTHTGDKPYECTICDHKTVRADHLKSHMRTHTGEKPHECTMCDYKSIQARYLKSHMMTHTGEKPHECTMCDYKSKQADALKLHIRTHTGEKPHECTMCDYKSIRAYALKLHMRTHTGEKPHECTMCDYKSVSAGNLKSHMSTHTGDKRYECTICDYKSVHAVHLKIHMRIHSGEKPYECTMCDYKSVQAVHLKSHMKTHTGQKPHECTMCDYRSILSNTLKLHMRSHTGEKPHECTMCDYKSKQADALKSHIRTHTGEKPHECTMCDYKSKQADALKSHIRTHTGEKPHECTMCDYKSIRAYALKLHMRTHTGEKPHDCSMCDYKSVSAGNLKSHMRTHNGEKPHECTLCDYRSILSNTLKLHMRSHTGEKPYECAMCDYKSIYEGSLKTHMRTHTGEKPYDRTMCDYKSVNAGNLKIHMRIHSGEKPYECTMCDYKSVRADNLNSHMRTHTGEKPYECTMCDYKSVNAGNLKIHMRIHSREKPYECTMCDYKSVRADHLKLHMRTHTGEKPYECTMCDYKSVRADHLKSHMSTHTGGKSYECTMCDFKYVRADHLKSHMRSHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-