Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.042 1.3e+02 3.3 0.1 17 29 28 40 18 52 0.73

2 8 0.00012 0.38 11.4 0.0 18 43 77 99 73 100 0.93

3 8 0.0008 2.5 8.8 1.5 5 40 109 142 106 146 0.88

4 8 0.023 71 4.2 0.3 18 36 149 172 145 173 0.88

5 8 0.0072 22 5.8 1.4 12 29 172 189 165 201 0.74

6 8 3.4 1.1e+04 -2.8 5.0 18 29 208 219 190 231 0.74

7 8 0.00033 1 10.0 4.8 15 43 233 258 214 259 0.80

8 8 0.0048 15 6.3 5.6 6 43 282 316 276 317 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.042	1.3e+02	3.3	0.1	17	29	28	40	18	52	0.73
2	8	0.00012	0.38	11.4	0.0	18	43	77	99	73	100	0.93
3	8	0.0008	2.5	8.8	1.5	5	40	109	142	106	146	0.88
4	8	0.023	71	4.2	0.3	18	36	149	172	145	173	0.88
5	8	0.0072	22	5.8	1.4	12	29	172	189	165	201	0.74
6	8	3.4	1.1e+04	-2.8	5.0	18	29	208	219	190	231	0.74
7	8	0.00033	1	10.0	4.8	15	43	233	258	214	259	0.80
8	8	0.0048	15	6.3	5.6	6	43	282	316	276	317	0.84

Coding Sequence: ATGAAGAAGCAATGGCACAACCTCAGCACGTTGCTGAAGTGTTCCAACGCGACCCCGTTCAAGGACAGGACAGACGCCGGCTACGTCTGCGCCTACTGCTTTAAAACATACCCAAACGCCGACATCCTAAGAACGCATACGCATAGCGAACACAGTAAAGAAACGCCTTTCTACAAAGCCGGGTCAGGAATGGCCACGTTCGTCGCCTTCTTAGATATAGTCGACCTTAAATGCAACATATGCGAACAACAAATGGACAGCTTAAACACGCTCACAGAACACCTAGTCTCCGCACACGACAAGAAGTACTACATCGGGGTAACAGACTACTTCCAACCGTTCAAGCTCACGAACGAGCAGCAGATCAACTGCTGCCTCTGCGGCGAAGTCTTCCACAACATGAAGCTTCTGATGCAGCATATGAACAATCACTACCGCAACTTTATCTGCACTATATGCGGAGCGGGTTTCGTCAACAGTTTCCGCCTGAATCGACACGAAACGACGCACCTCAAGAAGAAATCGAGCTTCCCCTGCCGGCATTGCGGGCAAGTCTTCGCGGCCGAGTCCAAGAAGAAAGCGCACGTCAACCAAGAGCATAAGGGCATCGCCGGCGATAGCGTCTGTCAAATATGCAAGGCGCGTTTCAAGAACTACTATCAGAAGACGCGGCATATGGTCCAAGTACACAACGCTGAGGGCATCAAATGTGATATGTGTGAGAAGCGATTCAATTTGAAGTCCAATTTGATGCTTCACATGAGGAGTGTTCATTTAAAAGAACGGCCATACGAATGTTCGGTCTGCAGTATGGGTTTCTTTATTAAGAGGCATATGCAAGGGCACTATATGGCCACGCATACAAACGAGAGGAAGTTCAAATGCGAGGTCTGCGGCAAAGCGTACGCTACGCAGAATAGTAAACGGAAGCATATGAAGAAGAATCATGGGATATCGAAGAACACGATCATGCTTCCTAATATGCCTAAGTGA
Protein Sequence: MKKQWHNLSTLLKCSNATPFKDRTDAGYVCAYCFKTYPNADILRTHTHSEHSKETPFYKAGSGMATFVAFLDIVDLKCNICEQQMDSLNTLTEHLVSAHDKKYYIGVTDYFQPFKLTNEQQINCCLCGEVFHNMKLLMQHMNNHYRNFICTICGAGFVNSFRLNRHETTHLKKKSSFPCRHCGQVFAAESKKKAHVNQEHKGIAGDSVCQICKARFKNYYQKTRHMVQVHNAEGIKCDMCEKRFNLKSNLMLHMRSVHLKERPYECSVCSMGFFIKRHMQGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGISKNTIMLPNMPK

Sequence clustering based on sequence similarity using MMseqs2