Celi011590.1
Basic Information
- Insect
- Crocallis elinguaria
- Gene Symbol
- -
- Assembly
- GCA_907269065.1
- Location
- OU026076.1:2606692-2608001[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.6e-09 1.3e-05 25.4 0.0 1 38 53 91 53 97 0.92 2 2 0.6 1e+03 0.1 0.0 16 25 170 179 166 179 0.82
Sequence Information
- Coding Sequence
- ATGCAGGCCGGTATCCCGAAGCTCAGATTCCAGCCGATGCCACGGTGCGCACCATCGAAGTACAACAGCCAGATGTTGACTCCCAGTACTTCCAGTATTTCCAGATACTTCAAAATTACTAGGCAAAATGACTCTAAGTGCCCATTCCAAAGTTTTAGTCCGGAAAATTTGGAATTAGCTATCCGAGCTATACAAGATGGAACGCTTAAACTAAGTGATGCTTCCAAAACCTATAAATTTCCAAAGAGCACGTTGTCCAGAAAGTATAAGAAAATCAACTGCACTCAAGAAAAAGCCGGTCATCCTACATTGTTTTCTCTTGAAGAGGAAAGGTTCATTGTACAGAAAATGATGCTATTGAGTCAATGGGGATTTCCATTTGACACCACTGACATTCGGGTCTTTGCGCAGAAATATTTAAATAAAATCGGAAAAAAAGTATACGAACTAAAAGATAATATGCCGAGAGTTGACTGGGCACGCAACTTTCTCGCAAGGTTCAAAAATGAACTTTCGAACCGCAAAGCTGCGAGCATATCAACTGACCGGGCGAAAATTACACCCGAAATAATTGATAGTTTCTTCACATCACTACACGGAATCAGTTGA
- Protein Sequence
- MQAGIPKLRFQPMPRCAPSKYNSQMLTPSTSSISRYFKITRQNDSKCPFQSFSPENLELAIRAIQDGTLKLSDASKTYKFPKSTLSRKYKKINCTQEKAGHPTLFSLEEERFIVQKMMLLSQWGFPFDTTDIRVFAQKYLNKIGKKVYELKDNMPRVDWARNFLARFKNELSNRKAASISTDRAKITPEIIDSFFTSLHGIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -