Cran007870.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- nfxl1
- Assembly
- GCA_951813785.1
- Location
- OX638382.1:41222263-41225865[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2 2.2e+04 -8.0 6.4 15 19 125 129 124 129 0.82 2 20 0.12 1.4e+03 -0.3 0.4 4 10 160 166 159 166 0.95 3 20 2e-07 0.0022 18.3 13.0 1 18 174 190 174 191 0.98 4 20 1.1 1.2e+04 -3.3 1.7 5 10 216 221 216 221 0.93 5 20 1e-06 0.011 16.0 11.7 1 18 227 245 227 246 0.97 6 20 0.85 9.5e+03 -2.9 0.8 6 10 271 275 270 275 0.91 7 20 2.5e-09 2.8e-05 24.3 12.5 1 19 281 299 281 299 0.99 8 20 0.0078 87 3.6 2.6 5 12 323 330 323 330 0.94 9 20 1.3e-07 0.0015 18.8 9.9 1 19 334 352 334 352 0.96 10 20 0.68 7.6e+03 -2.6 0.4 1 5 361 365 361 370 0.73 11 20 5.5e-07 0.0061 16.9 15.7 1 18 386 403 386 404 0.98 12 20 2.5e-08 0.00028 21.1 13.0 3 19 415 431 407 431 0.85 13 20 5.3e-05 0.6 10.5 7.4 9 18 476 485 474 486 0.89 14 20 0.082 9.2e+02 0.3 4.5 3 11 499 507 489 508 0.85 15 20 0.31 3.5e+03 -1.5 0.9 6 10 568 572 567 572 0.90 16 20 1.2e-06 0.014 15.7 7.0 1 11 578 588 578 589 0.99 17 20 2 2.2e+04 -4.2 1.6 15 19 602 606 602 606 0.85 18 20 0.00015 1.6 9.1 15.5 3 19 618 634 617 634 0.94 19 20 2 2.2e+04 -5.5 2.1 9 13 640 644 639 644 0.72 20 20 5.4e-08 0.0006 20.1 11.4 1 16 685 699 685 705 0.87
Sequence Information
- Coding Sequence
- ATGGAATTGGCGAGAAAAATGACCGAGAACTATGAATCAAGTTCCGAAGAGGAACAATTGGATGGGGAAAAAATTCTCGaaaCATTGTATAAGAACTATTCTGGAGGATATGATCAAATTCAGAAAACTACATCATTTCTGGAAAATGTTTTGCATTCCGGATCGGCGATATGTCTTATATGCATTGGTTCTGTGAAGAGGGCCGATTCAATTTGGACTTGCAAGTACTGCTATTGTATCTTTCATTTGTTGTGCGTTAAACGATGGGCCAACGATAGTATTGCATTGTTAAAAGACAAACAAGAAGAGCATGGCTATTACAATAATATGGGTGAATTTATTCccaagaaaattaaaacggtCAAATGGTGTTGTCCACAGTGTCGTTGTGATTACCGAGTGGAAGAAAAACCATCGCAGTATGAGTGCTTCTGTGGAAAAGAAATTAATCCTCCAAATCAAGAATGGCTTGTTCCACACTCGTGTGGCGAAATTTGTGGAAAGCCACTGCAACCTGAATGTGGACACATATGTTTATTGCTTTGTCATCCAGGTCCATGTCCTCCCTGTGCTCAGAATATATTTGTCAGTTGCAAATGTGGATTGTCTCCACCGAAATCAATACGATGCTTTCAGAAGAATTGGACTTGTGAAAGAAGATGTTTGGTAACTCTGCCGTGTGGGAAGCACATATGTGATCAGATTTGTCATGTTCCTGGAAAATGTCCGGCCTGTAATAAGACCAGCCTTCAGAAATGTGTTTGCGGGAATGAAGAAGCAGAAAGGAGTTGTTCACAACGAATATGGCATTGCAAGAAGGTTTGCAACAAGGAGTATAGCTGTGGCATTCATTTTTGTAAGAAAGTATGTCATGATGGGCCATGCGGACAGTGCCCTCTTAGTCTTCCAAGAACTTGTCCTTGCGGTAAAACTAGAAAGATTGCCCCGTGTAGCGAACAGATTGATACATGTGAAGACACCTGCCACAAGTTGCTTTCATGTGGGAAACACTTTTGCAGCCAACGATGTCACAAGGGTGATTGCAGCTTGTGTTCGAttattacaaagaaaaaatgtcGCTGTGGTTTGCACGAGAAAGAGTTACCCTGCTCGAAGACGTTTTTATGTGAAACCAAATGTAAAAAGATCCGTGATTGTGGAAAACATGCTTGTAACAAAAAGTGTTGTGATGGACAATGTCCATCGTGTGATAAGATATGTGGAAAATTACTATCCTGTAAGAAACACAAGTGTAGTTCAGTGTGTCACGATGGACCATGTTACCCGTGCAAGTTAAAATCTCAAGTTAAATGTTGCTGCGGTAGCACATGTGTTACAGTGCCTTGTGGTAGAGAGCGTAAGACACGTTTATCTTGCTCGAAACAATGCAGATTTCCCTCCAAATGTCACCATATAAACAAGCATAAATGCCACCGAGGTGAATGTCCACCGTGCAATCAAAAATGCGGATTAAAAAACGATGTCACCAATTGCGAACATCCATGTGATGCTCGTTGTCATGCCGCTGTACGAGTCCCTGTACAGCAAATCTCCAATACAAACAGTATATTTGAGTACAAAGTTGAAAGCTATGAGATAAAAAGTCTGCCTCATCCCAAGTGTGAGAGGAAGGTAAAGGTGTCCTGCTTAGGTGCTCACGAGATTGCCGAATGGGTGTGTTGGAATTCAAAGTCAACTTCATGTCAGCGGTTGTGTGGGCGCTCTTTGCAGTGTGGCAATCATACTTGCCAAAACGTTTGTCACATTGTACCCGACAAAGACAACAAACAACAACAAGAAGGTTGTGCACCATGCACTGAAGGATGTCTGATCAAACGTCCATCGGGTTGCATACATTCATGTAAAAAGCCCTGTCATCCATCTCCATGTAATCCATGCTCTGAACTAATAAAGACGAAGTGTCACTGTGGTCTCTCTCATGTTTACTTTAAATGCAGCGATTACTATTCCGTAGAGGGAACTCCAAGCGAGATTTTAGTGCGACAAGAAAAGCTTAAATCATGCGGAAATCGTTGTATCAAAACTtactCGTGTGGTCATCGTTGCTCCGCGGTTTGTCATTCGGGACCATGCCCCAATGCAGAAAAATGTCGTAAGAAGGTGAAATTTTATTGCGAATGCAAACGCATTAAAACAGATATTTCCTGTGAGAAATTACAGTCGAGTAATATTTCCATACCTTGTGATGAAAATTGTATAGCCCATAAGACGGCTTTGGAAAAAGTCAAGCAATGGGAGGAGGAGAAGCAAAGATTCGCTGAGGAGGAACGAAATCGTATTGAACTGGAACAATTCGAGAAAAGATTTGGCAAACGAAAGCCCCGAGGACGTCGAGCTGTCGCCCCACAACCCGAAAATGACAACCAACAAACGAAGTTCATAATTGTCGCTGCGATTGCAGCGACTGCAGCTACTGCTTTATTTTATTGGTATTTGGATTAA
- Protein Sequence
- MELARKMTENYESSSEEEQLDGEKILETLYKNYSGGYDQIQKTTSFLENVLHSGSAICLICIGSVKRADSIWTCKYCYCIFHLLCVKRWANDSIALLKDKQEEHGYYNNMGEFIPKKIKTVKWCCPQCRCDYRVEEKPSQYECFCGKEINPPNQEWLVPHSCGEICGKPLQPECGHICLLLCHPGPCPPCAQNIFVSCKCGLSPPKSIRCFQKNWTCERRCLVTLPCGKHICDQICHVPGKCPACNKTSLQKCVCGNEEAERSCSQRIWHCKKVCNKEYSCGIHFCKKVCHDGPCGQCPLSLPRTCPCGKTRKIAPCSEQIDTCEDTCHKLLSCGKHFCSQRCHKGDCSLCSIITKKKCRCGLHEKELPCSKTFLCETKCKKIRDCGKHACNKKCCDGQCPSCDKICGKLLSCKKHKCSSVCHDGPCYPCKLKSQVKCCCGSTCVTVPCGRERKTRLSCSKQCRFPSKCHHINKHKCHRGECPPCNQKCGLKNDVTNCEHPCDARCHAAVRVPVQQISNTNSIFEYKVESYEIKSLPHPKCERKVKVSCLGAHEIAEWVCWNSKSTSCQRLCGRSLQCGNHTCQNVCHIVPDKDNKQQQEGCAPCTEGCLIKRPSGCIHSCKKPCHPSPCNPCSELIKTKCHCGLSHVYFKCSDYYSVEGTPSEILVRQEKLKSCGNRCIKTYSCGHRCSAVCHSGPCPNAEKCRKKVKFYCECKRIKTDISCEKLQSSNISIPCDENCIAHKTALEKVKQWEEEKQRFAEEERNRIELEQFEKRFGKRKPRGRRAVAPQPENDNQQTKFIIVAAIAATAATALFYWYLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -