Cran016513.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:57441827-57446748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5 3.5e+02 2.3 3.2 3 21 1018 1036 1016 1040 0.92 2 11 0.005 0.5 11.3 0.3 2 20 1062 1080 1061 1082 0.92 3 11 1.7 1.7e+02 3.3 0.2 1 23 1102 1126 1102 1126 0.85 4 11 0.074 7.3 7.6 1.6 1 23 1131 1155 1131 1155 0.93 5 11 0.16 16 6.5 0.9 2 23 1181 1202 1180 1203 0.94 6 11 1e-05 0.001 19.7 1.6 2 23 1231 1253 1231 1253 0.98 7 11 0.0019 0.19 12.6 1.1 1 21 1258 1278 1258 1279 0.94 8 11 1.8 1.8e+02 3.2 0.2 2 23 1311 1332 1310 1332 0.92 9 11 0.0047 0.47 11.3 2.3 2 23 1346 1366 1345 1366 0.95 10 11 3.6e-06 0.00036 21.1 4.0 1 23 1372 1395 1372 1395 0.97 11 11 0.093 9.2 7.3 0.2 1 13 1412 1424 1412 1426 0.91
Sequence Information
- Coding Sequence
- ATGCTTGAGGAGGACCTCGATGATACACACTTGTGCATCAAGTGTAGCACCACAATTGTTGGCCTCGATAACTATGTCCAGCATCGGAAGACAAATTGCGGCGGTAAGACATCGCGTGCGACCATTGTTGCTGGCTATGGAGGCTTTGAGTATCCGGATGCGTCAAGCTATGCCAAGTCTGAGGTGGAGACCACGGGAGGAAAAACTTCGAAGGCCTTGAGTGATCCGTATGACTTGCCATATGAATTGGGCGCGGATGTGTTTTTCTCGTCGTTGCAGTTGCAAAGCGTTCAGGCaaccggtggtggtggtggtggtgggaagATTAACTCTACGCAGCAAGTTTTGACGAGGAAAGCCACCGCAACGCTGCTGTCTGCAGGACGAGATGAGGCAGAAGGTGACTGGCAAGAGCAGGCACGCAAGAATACGGACAACTTGATGAAAGTCGTACGGGACATTGGTGAAACGAAAAAGTTTGAACCGGTCTTCAAGCCGATTGCCTTCACGCATGAGTCTCCGGAGCCTGAGCAGAGcgacgatgaggacgatgacgatATGGACTTtgaggacgatgacgatgatgaggatTATGTACCGACTCCGTACAGTGGGGGAAAGTGGAAGCCCGGTAGTCAGCCGCCGCCAAGGAGTGGAGGGAAATGGAAAGGTAAATCGCAGTCAACTCCTACGGGCGGTAAATATAACTTCAGGATGGCCGTCACTGAGGATAGTAAGTGGAAGCCTTATAGGAAAGCGGTGCCTGCGACTGTGAGTAAGGCAATACCAGAGAAAAGATCGAGGAGATTATCTCAAAATCGTACGAAACTCAAGACCAGTGGTAAGTACACCGCAAAAGAGGCCGCAAATGGACTAGAATATCCTGAGGTTCCTGAAACCGGCGGTAAATGGAAGCCTGGTTTTCCAAAACTACCGGTTGGCGGCAAGTGGAAGTCTTCTGATGGACAAGAGTCACCAGAGGTCTTGGAAGCTGAAACTGGCGGTAAGTGGAAGCCTGGTTTTCCAAAACTACCGATTGGCGGCAAGTGGAAGTCTTCCGATGGACAAGAATCACCAGAAGTCTTGGAAGCTGAAACTGGTGGGAAATGGAAGCCCGGTTGTTCAAAAACATCAAAGAGGCCGGCTCCACCACTTACAGGAGGCAAGTGGAAGTCCTCAGAGGGTCATGAATCGCCAGTAATCTTAGAAACGCAAACGGGTGGTAAGTGGAAACCAGAAGAAGGTTCAACGGGTGGCAAGTGGAAACCAGGAGACGGTCCAACGGGTGGCAAGTGGAACCCAGAAGACAGTGCAACAGAAGGCAAATCGATACCAGACGACGGCCTAACAGAGGGCAAATGGAAACCAGAAGACGGTCCAACAGGTGGCAAGTGGAAACTAGGAGACGGTCCAACTGGTGACAAGTGGGAACAAGGAGACGGTCTAACGGGTGGCAAGTGGAAACCAAGAGACGATCCAATGGGTGACAAGTGGAAACCAGAAGTTGGTCCAACAGGTGGCAAATGGAAACCAGGAGACGGTCCAACGGGTGACAAGTGGAAACCAGAAGCCAAATCGATACTAGAAGATGGCCCAACCGGGGGCAAGTGGAATCCGAAAAACGGTCCAATAGGTGACACGTGGAAACCAGAAGACGGTTCAACAGGTGTTCAGTGGAAACCAGAAGACACTTCAACAGGTGGCAAGTGGAAACCAGAATACGGTCCAACAAGTAGCAAATGGAAACCAGGAAACGGTCCAACGGGTGGCAAATGGAAACCAGGAGACGGTCCGACAGGTGGCAAGTGGAAACCAGAAGACAGTGCAACAGAAGGCAAATCGATACCAGAGGACGGCCTAACAGAGGGCAAGTGGAAGCCAGAAGACGGTCCAACAGGTGGCAAATGGAAACCAGGAGACGGTCCAACAGGTGGCAAGTGGAAACCAGGAGACGGTCCAACAGGTGGCAAGTGGAAACCAGGAGACAGTGCAACAGAAGTCAAATCGATACCAGAAGACGTCCTTACAAAGGGCAAGTGGAAACCAGAAGACGGTCCAACAGGCGGCGAGTGGAAACCAGAAGTCGGTCCAATAGGTGGCAAATGGAAACCAGGAGAAGGTCCAACGGGTGGCGAGTGGGAACCAAAGGACAGTCTAACAGAAGGCGAATTAAAACCAGGAGACGAGCCAACAGGCGGCAAATCAAAACCAGAAAACGGTCCAACTGAAGACAAATCGAAACCAGAGGACGGTCCAGCAGGGGCCAAGTGGAATCCAAAAGACGGTTCAACAGGTGGCAAATGGAAACCAGAAGACGGTCCAACAGGTGGCAAGTGGAAACCAGAAGACGTCACAGAAGATGGCAAGTGGAATCCAGAAGACGGCCCAACAAAGGACGGTCTAACAAGTGGTAAATGGAAACCTGGAGAACGAGAAACGAACCCTACAGCATGGCGTGATCAGAAGCAAGCTGGCGATAGTCATCCTCCAGTTGAGCATACCAAAGGCAAATGGGTACCAGGGACAAAGGATAAAAAGGCACGAAAGCATAAGAAAAAGGTTCGCAAGGCTCAGGCAGAATTCTGGTGCAACATATGCTGTCGAAAGCTAACAACAAAGACTATCTACGAGAAGCACCTCAAATCTGGTGTGCATTTGTGGAAGTCTGAGACGGAACAGCAATTGGAACGTGCCGTGTCCCAACAACTTCCCCGACCTCCACCGGTACTTCTTAAACGAGAAGCCTCCCCGAAACCAGATCCTAGCAAGCGGCAAAGACGTAAGACCTTCATAAAATGCGGGACATGCAAGCATCGTATGCAAAAGTGCATTGTGGGCAAGCATTTGATCTCCCACTATCACTACGTCCGAATGACACTGAATCCTGAGGGTTCCTACGGCATGATTTTCGATAACATCCACCAGATAGTGCTGCAGTCACCCTTCCAATGCACTCCATGCCGATTTTACGCAAACACCGAAGAGAATTTCCTAAACCACTGGAATTCGGTGGAGCATCGGGACAGAACCGAAGGTCCTGGCAAGTTCTGGTGCAGTTTTTGCCACTTTGAGTGCGAGGACAATAATCAAATGAGGCGTCACCTCCTGGGCACTGAACATCGAGAGGTAATTCTAGCCATCAACCGGTCGGTTCCGATATGCATCAGCAAAAAGGTGACCATAGAGTGTCCAAAGTGTCATCAGGGCTTTCGCTTCAACATGGAATTGCGTCAGCATGCCCTGAGATGTGACGGCGCTAAGACTGCACCAATTGGCACAGCATCTGATGAGTACCAGTCACTGTATCGATGTGAATTGTGTCCCGAGGATGTATTCAAGTCGGTGGTAGCTCTCCAAAGGCACGCCAAGTTCAAACACAACGTTGAACAGTTTCACTGCTCTGTTTGCAAATTGGATTTCGAATCTGCCTCCGAAGCTGTAAAGCACCGCAAGACGAAGTCGCATAGATTGAAGTCAGCCGAAAAGTTGGGCAAGCCAAAGAGGGAGACCAACACCAGctcagagatctctgatgatCTGCAGTGTGAACAGTGTGATCATGTTTCTTCATCTGAAGTGGAGGCAATGTTACATCAAATAACTCACCACGACGGCTGTAAGAAGGACAAGGAAAAACCTTCTGTTGAAGACGAACCCGTCAAGGACGAACCAAATGATAACATTACACGAAAGTGTCCCTTGTGCAAGAAAATTTTCAACACGAAAAGGGAACTGAAAACCCATCTAAATACGGTCCATCCGGAGTCAAAACACATTTGTCCCGTTTGTGGAGAGTCTTTCACCCTCACCCAAGAGCTTTGCTCTCACAGAAGGTACAACGTTTGCGTCGCTTCAACCTCCCGACAACAGCCGCCATCAGCCTCATCCCCAAGGAAAGAGAAGACGACGACGGCTTTGAAAAAATCCTGGACATGTTCAGATTGCACATTTAGCTCTGCCTATGAGTCCGAGCTCATATTCCATCGGATTATCCACACCGAAGGTCTGGAGGCACTCCAAACGCCAACAAAGCTGAACTGCCCACTCTGTGAGAAATCTTTTGCGAAGCATTCGCTTCGGCAACATCTACGCCAGCATACCAACGAGAAGACATTCACATGTGAGATCTGTAACCGGTCATTCTCCCGGCGGCACAATTACAAGGAGCACATGCAATATGTGCACTCGGTTGGTGGTGTAAAGAAACGCAAAAAGAACGACGCCGATGAAAGCTTCATCTGCGATACTTGTGgcaagatttttcggaccaaTTTAGGCAATGAAAAGGTTATTTTACTCTGGCCTCCCACTTTAGAGGACGCATACCTGATTGACTCATCCGCTTTGCAGACGTTGAATTTTTGGAAACCTGCATTCCATCTTCGAATTTGTCTCGAATTCCTTGTCAATCTTGAGTTCAAGGATCTTCTTGGTCGTCATTCGTTGTCAATCTTGAGTTCAAGGATCTTCTTGGTCGTCATTCGTTGTCAATCTTGA
- Protein Sequence
- MLEEDLDDTHLCIKCSTTIVGLDNYVQHRKTNCGGKTSRATIVAGYGGFEYPDASSYAKSEVETTGGKTSKALSDPYDLPYELGADVFFSSLQLQSVQATGGGGGGGKINSTQQVLTRKATATLLSAGRDEAEGDWQEQARKNTDNLMKVVRDIGETKKFEPVFKPIAFTHESPEPEQSDDEDDDDMDFEDDDDDEDYVPTPYSGGKWKPGSQPPPRSGGKWKGKSQSTPTGGKYNFRMAVTEDSKWKPYRKAVPATVSKAIPEKRSRRLSQNRTKLKTSGKYTAKEAANGLEYPEVPETGGKWKPGFPKLPVGGKWKSSDGQESPEVLEAETGGKWKPGFPKLPIGGKWKSSDGQESPEVLEAETGGKWKPGCSKTSKRPAPPLTGGKWKSSEGHESPVILETQTGGKWKPEEGSTGGKWKPGDGPTGGKWNPEDSATEGKSIPDDGLTEGKWKPEDGPTGGKWKLGDGPTGDKWEQGDGLTGGKWKPRDDPMGDKWKPEVGPTGGKWKPGDGPTGDKWKPEAKSILEDGPTGGKWNPKNGPIGDTWKPEDGSTGVQWKPEDTSTGGKWKPEYGPTSSKWKPGNGPTGGKWKPGDGPTGGKWKPEDSATEGKSIPEDGLTEGKWKPEDGPTGGKWKPGDGPTGGKWKPGDGPTGGKWKPGDSATEVKSIPEDVLTKGKWKPEDGPTGGEWKPEVGPIGGKWKPGEGPTGGEWEPKDSLTEGELKPGDEPTGGKSKPENGPTEDKSKPEDGPAGAKWNPKDGSTGGKWKPEDGPTGGKWKPEDVTEDGKWNPEDGPTKDGLTSGKWKPGERETNPTAWRDQKQAGDSHPPVEHTKGKWVPGTKDKKARKHKKKVRKAQAEFWCNICCRKLTTKTIYEKHLKSGVHLWKSETEQQLERAVSQQLPRPPPVLLKREASPKPDPSKRQRRKTFIKCGTCKHRMQKCIVGKHLISHYHYVRMTLNPEGSYGMIFDNIHQIVLQSPFQCTPCRFYANTEENFLNHWNSVEHRDRTEGPGKFWCSFCHFECEDNNQMRRHLLGTEHREVILAINRSVPICISKKVTIECPKCHQGFRFNMELRQHALRCDGAKTAPIGTASDEYQSLYRCELCPEDVFKSVVALQRHAKFKHNVEQFHCSVCKLDFESASEAVKHRKTKSHRLKSAEKLGKPKRETNTSSEISDDLQCEQCDHVSSSEVEAMLHQITHHDGCKKDKEKPSVEDEPVKDEPNDNITRKCPLCKKIFNTKRELKTHLNTVHPESKHICPVCGESFTLTQELCSHRRYNVCVASTSRQQPPSASSPRKEKTTTALKKSWTCSDCTFSSAYESELIFHRIIHTEGLEALQTPTKLNCPLCEKSFAKHSLRQHLRQHTNEKTFTCEICNRSFSRRHNYKEHMQYVHSVGGVKKRKKNDADESFICDTCGKIFRTNLGNEKVILLWPPTLEDAYLIDSSALQTLNFWKPAFHLRICLEFLVNLEFKDLLGRHSLSILSSRIFLVVIRCQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -