Basic Information

Insect: Criorhina ranunculi
Gene Symbol: L
Assembly: GCA_951813785.1
Location: OX638383.1:437022-442492[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 4.3e-06 0.00043 20.9 1.7 1 23 163 185 163 185 0.98

2 16 0.36 36 5.4 5.8 1 23 191 213 191 213 0.98

3 16 1.9e-07 1.9e-05 25.2 3.1 1 23 219 241 219 241 0.99

4 16 8.7e-06 0.00087 19.9 0.3 1 23 247 269 247 269 0.98

5 16 6.7 6.7e+02 1.4 0.2 2 23 332 355 331 355 0.81

6 16 0.0024 0.24 12.2 0.4 2 23 372 394 371 394 0.97

7 16 0.064 6.4 7.8 1.3 1 23 475 497 475 497 0.97

8 16 0.00017 0.017 15.9 1.7 2 23 505 526 504 526 0.95

9 16 0.00011 0.011 16.5 1.3 1 23 534 559 534 559 0.91

10 16 0.0011 0.11 13.3 2.9 1 23 651 673 651 674 0.96

11 16 0.00082 0.082 13.7 4.6 2 23 854 876 853 876 0.96

12 16 0.095 9.5 7.2 0.1 1 23 882 904 882 904 0.92

13 16 0.18 18 6.4 0.3 2 23 912 933 911 933 0.95

14 16 6.9 6.9e+02 1.4 0.7 2 23 1022 1043 1022 1043 0.92

15 16 0.0067 0.67 10.8 0.0 1 23 1053 1075 1053 1075 0.96

16 16 0.048 4.8 8.1 1.3 1 23 1082 1104 1082 1104 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	4.3e-06	0.00043	20.9	1.7	1	23	163	185	163	185	0.98
2	16	0.36	36	5.4	5.8	1	23	191	213	191	213	0.98
3	16	1.9e-07	1.9e-05	25.2	3.1	1	23	219	241	219	241	0.99
4	16	8.7e-06	0.00087	19.9	0.3	1	23	247	269	247	269	0.98
5	16	6.7	6.7e+02	1.4	0.2	2	23	332	355	331	355	0.81
6	16	0.0024	0.24	12.2	0.4	2	23	372	394	371	394	0.97
7	16	0.064	6.4	7.8	1.3	1	23	475	497	475	497	0.97
8	16	0.00017	0.017	15.9	1.7	2	23	505	526	504	526	0.95
9	16	0.00011	0.011	16.5	1.3	1	23	534	559	534	559	0.91
10	16	0.0011	0.11	13.3	2.9	1	23	651	673	651	674	0.96
11	16	0.00082	0.082	13.7	4.6	2	23	854	876	853	876	0.96
12	16	0.095	9.5	7.2	0.1	1	23	882	904	882	904	0.92
13	16	0.18	18	6.4	0.3	2	23	912	933	911	933	0.95
14	16	6.9	6.9e+02	1.4	0.7	2	23	1022	1043	1022	1043	0.92
15	16	0.0067	0.67	10.8	0.0	1	23	1053	1075	1053	1075	0.96
16	16	0.048	4.8	8.1	1.3	1	23	1082	1104	1082	1104	0.93

Sequence Information

Coding Sequence: ATGTCGGACGGGACAATTACTCCGAATTCGTTGCACAACCATCACcagcaccaccatcatcatcagcaccAGAGGTTGCACCATTTGCAGTACCAGTGTGAACAACAGAACAGCGGTGGTCTCAATCGCGACAGGCATCAGAATCGACGTGTTTCAGCCATAAATGGAGCAACTGCCACCGGTGTTGGTGTTGCCGGCGAGGACGATGagaatgacgacgacgacggggatGGGGACGAGGATGACGACGCCGCAAATTCTAGCGAGGAAAGGGTTTTCCTCTCATCGAATGGTGGTGCCAACGatgccgccaccaccaccaccaacacaacaacaTCCACCACCGCGAGTAGCATCAGTGGCGCAACCGGCGAACATTCCGTCAAAATTCCAACGAAATTGCGGAAAATCGATAGGGATTCGGCAAAGTTGTTGGATAAGTTGACAAGTGATGGCATTAAGAGCGCGACCGACCGCGACGGATCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGCCTTGGGTATCTGAAGAAGCATGAACAGaGTCATGCGGAGCACCTTCCATTCAAGTGCGACTATTGCGCTAGGCTGTTCAAGCACAAGAGGTCACGTGACAGGCACACCAAACTGCATACTGGAGATAGACGATACAGGTGTCCACACTGCGAGGCTGCTTTTTCTCGAAGTGACCACCTCAAGATTCACATGAAAACTCACGATAACCAGAAACCATTTCAATGCACCATCTGCAATCGTGGCTACAATACAGCGGCTGCTCTGACGTCTCACATGCAAAATCACAAGAAACAGGCTGCTCTGCTGGCTGCTGGAGGCAACCCTGCTGCGCTCAATTACAGCCCAAGGTCAACTGGATCGGGTTCGAGTAATGGCAGCCTGCAGAAGCGAAGGTACGCATCGGTGGTAAACACAAAGAGTCCCAGTCCAAGTACACTGGACTATGCAAAGCGATTGCGAAGCTCCTACATCTCGTGCATGTATTGTACGAAATCGGATTTTGCATCCATGGAACAGCTAAGCAGTCACATTCAGGCTATGCATGAGAAGGAAGCGTTGGCTAATCAGCCTGCCACCAGCGGTTTCCAGATGTCATGTGAATACTGCACTATGAAGTTTCCCAACATTCCAGCAATGTTTCAGCACATGAGAACCACTCACATCGACCGTTTGTCCAGTCCGAGTTCATACTTCGAGCACTTTAACCGCCTGGCGGCGGCGGGGACATTTAGCCCACGCTTGGCAACTCCGAAGTCTCATGAAATGAAGGTTAAGGTCGAGGAGCCGAGTCCTAAGGAGATCGAAAAACCCGATGACGAACCGACAGATTTGAGTCAAAACAAACGCACCGCTCAGACTCCTTCGCAAGAATCAGCCGAAGCCGCGGAAAAACCGGGGGTGTTCTTTTGCAACCAATGCAGCGATGGCTTTCCGGATTTTGAGAGTTTCCGCAACCACCTCAAGTCGCACATAGTTCATGGGCTGAATTTGGTGTGTCATCACTGCGGCCAGACTTTGCGCGATCAGTCCGAGTACGAGAGACACGTGGTCTCCCACTTTCTAATCACTAGTTCGGAATACAGTTGCACCGAGAAGAACTGTAACAAGACATTCTCCAAGCCAGAGGAGCTGCAGAAACATCTTTTCGACAGTCACATACAAACGATGTACAAGTGTCTTCTGTGCGCGGATCTCTTTGAGACAAAGGTTgcgattcaagttcactttgcTTGCATACATTCGCCGGAGAATAAGATCTTCCGGTGTTCAGCCTGCATGGACACCTTCCATGGCGAACAGGAGTTCCATATTCATGTGAAGACTCGACATCAAACCACAGCCGGTTCACCCATCCAGTGCATGTTCTGCAGAGCAGTATGTTCCACAGAGTTGGAGATGCATTTCCATCTGGCCGCTCATGCTCGACAATTCCGGTGTCCATCGTGTCCGGAGACATTTCACGTCGAATTTCTGCTCGATCGTCACATGCAGACACACCATGGACAAAAGGATGTCGAAACACCATCGGCGGTCAATCCTCCGCCAGTTAACGCGATTAATCCGCTTTACATGAGCGCGCTGTTCAGTAAGCCACCACCCTCGACTCAGAACAACAATAACAGCATCCTGGACTACAACGCCTTTGCAATGGGAAAGAACCTCTTCGCCGGTGCTTCAGGCAATAAGTTCTACAATCCTCTGCAAGTGGACACCAGTTCTTCAATAAAGCACCCTTCTCTGGTGTACGCCAGCCTAAATCAGCGGTACTTTGACACCAATCGAACAATTCTAGAAATGTACAACCAGCATCAGCAGGAGAAACTTGGTAGCGCCGCAGTGGCAAGCTACTTCAACAgcccaaacaacaacaaccgaaGTGCACCTAAGCCTCTGCAAGAGCCCAACAAACCCTCGGACCGCTCCATAGGCAGCGGCGGCTTCAGCTGTGGTATGTGCGAACGCAATGATTTCCGAACCGAGGCCGAAATCCATTCGCACCGCAAGATCGTGCACAATCTCAAGACGGGAGTAAGTCTCCGTTGTGCCTACTGCAGCGGCAACTTCAAGTCACGCAGCGAGCTGGAACACCACATGAAAACTTGTCACAACTCAACTGGGAAGCACAAATGTCTGATTTGCGATGAGATTTTCCCGTCGCCTGCTATCCTCGCCGAGCATAAGCTGCAGCACTCAAAAGTGGGTCAATCCGGGAAGTGTTCACACTGCTCCAAGGCACTGGCCGACGTGACCGCCTTCAAGGGTCATCTCTTGGAACACAACACAGAGGGACAGATGCCAGTACAATGTATTTGCTGCCGTCAAACGCTCCATTCGGACTTTGAAATAGGTCTACATGCCAAATTCCACACAAAATCGTCGTCTGTCTCGGAGAGCGTGTGCGCCCTCTGCCTAGAGACAATACCCAACACTATCGACGCCAAGGTCTGCGAGAAATGCTGCCGAAAGCACAATTTAAACACGAAGTTCAACAGCCAGCGCAACTTCGAAAGCGGTTCCGGTGCGTCGAACTACGTCGAGAACCGATGCAACTTGTGCAAGGTTATCATGCCACACTCGCAAAAGCTGCAGGAACACCTGGTTGAGCACACTTTCGCCGGCTGCGAGGACCGAGGCTTCACATGCTACATCTGCTCCGCAGTTTTCACCGCACCCGCTGGTCTCCTCAGCCACATGACAGACCATGGGGCCAACTCTCGCCCATACGACTGCAACCTTTGCACCGAGAAATTCTACTTCCGCGCCGAGCTGGATCATCACCTAGTGGATCACGAAATCAGGGATCGTCTTAAGAACACCCTCAGCGGAGATCCCAATCCAGTTGCAGACGCAAAGAAACCTTTCGACGAATCTCCGCCAGAAGAAGCAACTTCCAAACTGGAACCGAAAATCGAAGTGGCCGACGAAAAGACCGCCGACGAAGAAGACGACGAGTACATCGAGGTCGAGAAAGTACCAGAAGTTCCACGCACCGTCGAAAAGGACGACTAG
Protein Sequence: MSDGTITPNSLHNHHQHHHHHQHQRLHHLQYQCEQQNSGGLNRDRHQNRRVSAINGATATGVGVAGEDDENDDDDGDGDEDDDAANSSEERVFLSSNGGANDAATTTTNTTTSTTASSISGATGEHSVKIPTKLRKIDRDSAKLLDKLTSDGIKSATDRDGSYQCQFCDKSFPRLGYLKKHEQSHAEHLPFKCDYCARLFKHKRSRDRHTKLHTGDRRYRCPHCEAAFSRSDHLKIHMKTHDNQKPFQCTICNRGYNTAAALTSHMQNHKKQAALLAAGGNPAALNYSPRSTGSGSSNGSLQKRRYASVVNTKSPSPSTLDYAKRLRSSYISCMYCTKSDFASMEQLSSHIQAMHEKEALANQPATSGFQMSCEYCTMKFPNIPAMFQHMRTTHIDRLSSPSSYFEHFNRLAAAGTFSPRLATPKSHEMKVKVEEPSPKEIEKPDDEPTDLSQNKRTAQTPSQESAEAAEKPGVFFCNQCSDGFPDFESFRNHLKSHIVHGLNLVCHHCGQTLRDQSEYERHVVSHFLITSSEYSCTEKNCNKTFSKPEELQKHLFDSHIQTMYKCLLCADLFETKVAIQVHFACIHSPENKIFRCSACMDTFHGEQEFHIHVKTRHQTTAGSPIQCMFCRAVCSTELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQTHHGQKDVETPSAVNPPPVNAINPLYMSALFSKPPPSTQNNNNSILDYNAFAMGKNLFAGASGNKFYNPLQVDTSSSIKHPSLVYASLNQRYFDTNRTILEMYNQHQQEKLGSAAVASYFNSPNNNNRSAPKPLQEPNKPSDRSIGSGGFSCGMCERNDFRTEAEIHSHRKIVHNLKTGVSLRCAYCSGNFKSRSELEHHMKTCHNSTGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCSHCSKALADVTAFKGHLLEHNTEGQMPVQCICCRQTLHSDFEIGLHAKFHTKSSSVSESVCALCLETIPNTIDAKVCEKCCRKHNLNTKFNSQRNFESGSGASNYVENRCNLCKVIMPHSQKLQEHLVEHTFAGCEDRGFTCYICSAVFTAPAGLLSHMTDHGANSRPYDCNLCTEKFYFRAELDHHLVDHEIRDRLKNTLSGDPNPVADAKKPFDESPPEEATSKLEPKIEVADEKTADEEDDEYIEVEKVPEVPRTVEKDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01542500;
90% Identity: iTF_01223799;
80% Identity: -