Basic Information

Insect: Criorhina ranunculi
Gene Symbol: -
Assembly: GCA_951813785.1
Location: OX638385.1:48924889-48926890[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00056 0.056 14.2 1.4 2 19 183 200 182 200 0.97

2 12 3.6e-06 0.00035 21.2 0.5 2 23 218 239 217 239 0.97

3 12 0.014 1.4 9.8 3.1 1 23 254 276 254 276 0.98

4 12 2.8 2.8e+02 2.6 5.3 1 23 282 305 282 305 0.91

5 12 0.24 24 6.0 0.7 2 23 333 353 332 353 0.79

6 12 0.18 18 6.4 1.4 1 23 360 382 360 382 0.87

7 12 0.018 1.8 9.5 0.9 2 23 390 411 389 411 0.96

8 12 4.3e-05 0.0043 17.7 0.3 1 23 418 440 418 440 0.98

9 12 4.9e-05 0.0049 17.6 4.6 1 23 446 468 446 468 0.99

10 12 8e-05 0.0079 16.9 4.7 1 23 474 497 474 497 0.97

11 12 0.002 0.2 12.5 1.1 1 23 502 524 502 524 0.95

12 12 0.00048 0.048 14.5 0.4 1 23 529 552 529 552 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00056	0.056	14.2	1.4	2	19	183	200	182	200	0.97
2	12	3.6e-06	0.00035	21.2	0.5	2	23	218	239	217	239	0.97
3	12	0.014	1.4	9.8	3.1	1	23	254	276	254	276	0.98
4	12	2.8	2.8e+02	2.6	5.3	1	23	282	305	282	305	0.91
5	12	0.24	24	6.0	0.7	2	23	333	353	332	353	0.79
6	12	0.18	18	6.4	1.4	1	23	360	382	360	382	0.87
7	12	0.018	1.8	9.5	0.9	2	23	390	411	389	411	0.96
8	12	4.3e-05	0.0043	17.7	0.3	1	23	418	440	418	440	0.98
9	12	4.9e-05	0.0049	17.6	4.6	1	23	446	468	446	468	0.99
10	12	8e-05	0.0079	16.9	4.7	1	23	474	497	474	497	0.97
11	12	0.002	0.2	12.5	1.1	1	23	502	524	502	524	0.95
12	12	0.00048	0.048	14.5	0.4	1	23	529	552	529	552	0.95

Sequence Information

Coding Sequence: ATGGATGATTATAGTGAAATTAAAGAGCTTCTATTTAAATTGGAGAATCCCTTGCCCATATGCAGAGTTTGCTTAAATGACACTTTGGAATATATCGACTTTGAGGCATCCATGTGTCTTATTGGCGATACTGAATTTACTTATTTCGACGGCTACAATGAGCTTACATATTTTTCAATAAGTCTTGATCATAAGTTACCTTCTCGCTTGTGTATTACATGTTCTGATGATCTTCGCAATGCGTTCCTATTCTCGAAACGTGTAGAAAATGCTGAAACTACCTTAAAGCGCCTAAAGGCTCACTTGGACTGCGAAAACGGAGTTTCCAAACGTGAAAATGAAATCGTTGAAAACAATGAATGGGAAGTGCACGTTTCTGAACCCGTGGGTTTCCTTGAGACATCAGTTAATGTTGAAAATTCAGAAACACAAACTCAGCCGCTTATCGTAACCGAATCAAGCACAACCTCTGCCATTAGTGAAATCGAAGATGATTCGGATAGTGAATGGGCGATTGATAAATCCATTGACCCAAATAATTCCCTGCAGTGTAAAGATTGTGGAAAAATTTGCACATCACCCGAGTCCTACAGAAAACATTGTCTACCACACCAGTTTGCAAAATGTAAGCCAAAAGCTAGAAAATGCATTAAGTGCAAACAATGTGGCAAAACATTTAGACTGTATGGTGATTTAGAAAAGCATTTACTCATACATGCAATggctaaaattaaaatttctaaaGGAAAAAAGACATCTTATGTGTGCAACACTTGCCACAAGAGATATGGGACTGTCTTTGGCTTCGTTGATCATATGCACATTCATAATGGCACAAAGCCGTATAAGTGTAGCACATGTGGCGCATTCCGTCATACCAGAGAAAAACTTAAGTACCACAAATACTATACTCACGGAAAAGGCTTGCAACTTCGCCTTGCTATTAAAGATGAAAAGATGAAATTCATGGAAACAGATCCACTTCGGTTCAAGACCAAATGTCGATACTGTGGAAAACTGTTTGTCAATGAGGTGATTAAGCGCCACGAGAATATGCACGAGAATCCTAAAAAACGGTTCAGGTGTATCGTTTGTTCAAAAAGTTTTTACACGGAACagaatttgaaatttcattccGAAATACATCTAGAAGTGCGGAAGCCCTTAAAGTGCAAGATATGCGGTCAGGAAATACTACGACGATACTCCATGAAATTGCACATGCAGAGGCATGCCAGCGAAGATCAGAAGTTTAAGTGCGATATTTGTGGAACAGTATTATCGACGAAAGGATCACTGTCAGAGCATAAGGAGAAACATTCTATCGACAGAAAATACAAGTGTGAACATTGCGATAAGAGCTACATAAAAAAATCACGCCTTGTGTATCATACGCGTAGCCATACTGGTGAAAACCCATTCCAATGTAATCAGTGCAATAAGAGCTATAAATTGCGATGCCACCTGAGGGTTCACATAAATGTAGCGCATGGAAATCAAACTTTCGATTGTGATAACTGTGATGCAAAATTCAAATCATATAGCGGATTCATAAACCATAAGTTTGTGCACACAGGATATCCATACGAATGTCCCCAATGTAGGAAAGGAACAGCCACCCGAGAAAGattaaaAAAACACTTGCTTCAAGTTCACAAGGGTTATATGACTTCAGAGCAATTTGATGAGACATACCCCAAGAAACATGAAATAAGAAAGGTTAAACCAATTAAGGCCAAAGTTGAAGTAAAAAGTGAACTAAGTCTTTAA
Protein Sequence: MDDYSEIKELLFKLENPLPICRVCLNDTLEYIDFEASMCLIGDTEFTYFDGYNELTYFSISLDHKLPSRLCITCSDDLRNAFLFSKRVENAETTLKRLKAHLDCENGVSKRENEIVENNEWEVHVSEPVGFLETSVNVENSETQTQPLIVTESSTTSAISEIEDDSDSEWAIDKSIDPNNSLQCKDCGKICTSPESYRKHCLPHQFAKCKPKARKCIKCKQCGKTFRLYGDLEKHLLIHAMAKIKISKGKKTSYVCNTCHKRYGTVFGFVDHMHIHNGTKPYKCSTCGAFRHTREKLKYHKYYTHGKGLQLRLAIKDEKMKFMETDPLRFKTKCRYCGKLFVNEVIKRHENMHENPKKRFRCIVCSKSFYTEQNLKFHSEIHLEVRKPLKCKICGQEILRRYSMKLHMQRHASEDQKFKCDICGTVLSTKGSLSEHKEKHSIDRKYKCEHCDKSYIKKSRLVYHTRSHTGENPFQCNQCNKSYKLRCHLRVHINVAHGNQTFDCDNCDAKFKSYSGFINHKFVHTGYPYECPQCRKGTATRERLKKHLLQVHKGYMTSEQFDETYPKKHEIRKVKPIKAKVEVKSELSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -