Cran014439.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- grau
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:33620297-33622587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.18 18 6.3 0.2 2 23 265 287 264 287 0.93 2 10 2.7 2.7e+02 2.7 0.1 6 23 296 313 296 313 0.97 3 10 0.00085 0.084 13.7 0.9 1 23 319 342 319 342 0.94 4 10 1.2e-05 0.0012 19.4 2.2 1 23 350 372 350 372 0.98 5 10 1.1e-05 0.0011 19.6 0.4 1 23 380 403 380 403 0.96 6 10 0.53 53 4.9 0.1 3 23 411 431 409 431 0.93 7 10 0.0069 0.69 10.8 0.5 2 23 440 461 439 461 0.97 8 10 4.9e-06 0.00049 20.7 0.2 1 23 466 489 466 489 0.97 9 10 3.7e-05 0.0036 18.0 3.8 1 23 495 517 495 517 0.98 10 10 6.1e-06 0.0006 20.4 5.3 1 23 523 546 523 546 0.98
Sequence Information
- Coding Sequence
- ATGGTTTGTCGTTTATGTTTAACTGAATCTGATGATAGTATTGCAATATTTAgtgaagaaaaaattcaaaagtatatAACAAAGTTTCTGCAACTAGAGTTTACTCCGGAAGATCCAGTTTCGAAAGTGATATGTGCTGTTTGCTGGCAGCAGTTGCagaattttcaaacattttactTTCGGGTCGAAGAAGCACAAAAAACTTTGTCCACAGTTCATGAAGGCTTGAAAAAGGAAGCTGGTAAAAATGATAATAAAGCCCATAATATTGAGAAAATACCTTTCGAGCGTGTTAATACTGATTCAAGTTTAAATTTGCTGAAGGAAGAGGACCTTGTCGCAAAATCCGATGATGAAACCGTTGATACAAGCGAAGCATTTGACTACTTGGATGAAGAAATTGTAAAAGTTGAACTTCACAACGAGGAAAGTCCAGATGCTGCATCTACTACCTTACCTGACGCCAATAAAGAAACTCCTACGCGAAGAATTACAAGAGGTACTAAGTTTAAAAGCCAGATAACACCTGAAACGGAAAATGGTTCAGTTGTACAAgcacaaagaaaaagcggacgaTCCAAAAAGTTTAAAGATGAGATTCAGAAAACTCCcgataaaatagaaaaagacgATAAAGAAACCATCCCCGATATAAATGCGAAAAGAAAGCGGGGTCGACCGAGAAAGGGAGAAGAAAGGCCTAAAGTCGAAAAGATTAGATCCGAAAAGAGTGAGAGAATTTTGGAAACAGCAAAAGAATTCGATGATATTATCCAAAAGAATATGAATCTAAGTTGCAACATTTGCGCAGCACATCTAATTGACTTCGCAGAGTTAAAACGTCATTTTCGAGCCGTACACAACCGTAAAGGCTACGCAGTGTGTTGCAACAAACGATTGTACAAACGTGGTTTGGTTGTTGATCACATCAACACACACAATAATCCAGAATACTTCAAGTGTACTGACTGTGGTAAGGTCATGGCCGATAGAATGTGTCTCCGAAATCATGTGCTTTTGATGCACCAGAATGAAGACGATAAGGTGTATCAGTGTCCATACTGTCCTAAGAAATATGCCAAACAATATCTGTTAGATCATCATCAGATAAAACATGTTCCACAGGAAGAGTGCACATTTATGTGTGCTGAGTGCGACAGAGGATTCCCAACGAAAACAACCCTGACAAAgcatttaaatcaaattcacTCGACAATATATgacaaaatgtgtgaaatttgtGCAAAACTGATTCGTGGAAATGCAGCTTTTGAGCGTCACATGGACGATCATGAGGGAATAGTTCGACCGCAGGTTCAATGTGAAATATGCGGCTCgtggttaaaagacaaaaatagcCTGCGTAAGCACATGTACAAGCATGACGGGAAGTCATACTCTTGTAATGTATGCGGTAAAAGTGCACCGTCGAAGAGCGCTTTGCAAAGCCATCGCAGATATGTACATCAAACAGTGCGTCAATTTCATTGCACTTTCTGTGAAAAGTCATTTAAAAAGGCTGTCAATCTGAGGGAGCACCTGACAACGCACACCGGAGAGGTACTGTACACATGTCCACATTGTCCGAAAACATTCAATTCCAAGGCAAATATGCATGCtcatcgaaagaaaaaacatcGTGAGGAGTGGGAAGCCAACAGACGATATAACGTTAAACAAGTCGCACCTGCTGAAACCAATTCCGTTTTATGTTAA
- Protein Sequence
- MVCRLCLTESDDSIAIFSEEKIQKYITKFLQLEFTPEDPVSKVICAVCWQQLQNFQTFYFRVEEAQKTLSTVHEGLKKEAGKNDNKAHNIEKIPFERVNTDSSLNLLKEEDLVAKSDDETVDTSEAFDYLDEEIVKVELHNEESPDAASTTLPDANKETPTRRITRGTKFKSQITPETENGSVVQAQRKSGRSKKFKDEIQKTPDKIEKDDKETIPDINAKRKRGRPRKGEERPKVEKIRSEKSERILETAKEFDDIIQKNMNLSCNICAAHLIDFAELKRHFRAVHNRKGYAVCCNKRLYKRGLVVDHINTHNNPEYFKCTDCGKVMADRMCLRNHVLLMHQNEDDKVYQCPYCPKKYAKQYLLDHHQIKHVPQEECTFMCAECDRGFPTKTTLTKHLNQIHSTIYDKMCEICAKLIRGNAAFERHMDDHEGIVRPQVQCEICGSWLKDKNSLRKHMYKHDGKSYSCNVCGKSAPSKSALQSHRRYVHQTVRQFHCTFCEKSFKKAVNLREHLTTHTGEVLYTCPHCPKTFNSKANMHAHRKKKHREEWEANRRYNVKQVAPAETNSVLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -