Cran019457.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- Hivep3
- Assembly
- GCA_951813785.1
- Location
- OX638385.1:48915965-48918840[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.013 1.3 9.9 0.7 1 23 209 232 209 232 0.92 2 14 0.028 2.8 8.9 1.6 1 23 241 264 241 264 0.95 3 14 4.1e-05 0.0041 17.8 0.2 2 23 271 293 270 293 0.95 4 14 0.13 13 6.8 0.2 3 12 302 311 301 320 0.88 5 14 0.2 20 6.2 1.5 2 23 340 361 339 361 0.97 6 14 0.032 3.2 8.7 2.0 1 12 367 378 367 390 0.88 7 14 0.0035 0.34 11.7 2.3 2 23 399 420 398 420 0.97 8 14 0.13 13 6.8 0.6 1 20 428 447 428 451 0.87 9 14 0.0013 0.13 13.1 0.8 1 20 458 477 458 478 0.95 10 14 4.2e-07 4.2e-05 24.1 1.2 1 23 487 509 487 509 0.98 11 14 1.2e-06 0.00012 22.6 1.4 3 23 516 536 514 536 0.97 12 14 0.0048 0.47 11.3 1.9 3 23 544 564 542 564 0.97 13 14 0.0073 0.73 10.7 7.9 1 23 569 591 569 591 0.98 14 14 0.0036 0.36 11.7 0.1 1 23 596 619 596 619 0.97
Sequence Information
- Coding Sequence
- ATGGAACCATCGATAGTCTGTCGTGCTTGCTTGTCAACTATTTCTCTAGAATACATCGATTTAGAGACTCCACTTTATGATGATATTACGTTCTTAGAGTGTTTCAACTACTGCACCAAACTTCAAGCTAACCTGGAGGATGAATTACCAAGCAATATATGTGTGTCCTGTGGTAGATCATTACAAATAGCCTATGATTTCCTTAAAGCATCCTTAAATGCAGATCGCGTTCTTCGTGACAGTTTGCCATTCTTTGAAGACCTACATAAtttagaagaaaacaaaaatacattatATGACGGAGATGCGGTCGTTAAGAAGGAGGAAGAAAGTGATGATCTAGATTACAATGCTGAATACATTGAAGAAATTGAAAACTTCGATTTGGACGAAATGAAGGAGGAAGTAACTGAAGAGCTGCCGAAATTTGAAGTGGTAATTTCCAATGAAGATGTAGCCATAGAAGAGACCAATGATATGTGGTTATCAACAGATGAAGACAGTAATTGGCCTGTATCGAGATTGGAAGAGGATAATGAAACTATTAAGTGTAGAATTTGCGCGAAAACGATTGCAAAAGAAGAATATGATGGACATATAAACATGCACATAGGCAGTAAGGAATACAAATGTGATGAATGCGATGAGAAGTTTTTCAGCGAAAATGTGATGGAAATGCATAGGAAAGCAAAACACAAATCGCTGGAACGGAGAGGAAACTTCATTTGCGGGTGGTGTGGGGAGGCCTTTGATTGTAGATCAAAGCTATGCCAACATCGCATAATTGACCATCAAGGAAAGGCACCGAGTTCTTGTTTAACGTGCGGCGAAGAGTTTTCCGATGAAGTGAACCTGCGAAAACACGTGAAGAAAGCCCACGGTATACCCAAAAAGGCAGTTCTTTGTCCATACTgcaataaagaatttaaaagcATAGCACAGCACATAAAACTAAATCATCCAGATATCTTGAGAATACCGATGCCCGATGACGGTAGCATTAAACTGTCTAAAAACCAGTGCCCGTACTGCTTCCGCCTCTGTCAAAGCAAAGGCATTTTAAATGATCATATAAATACTCACACGGgcgaaCGTCCTTACTCCTGTTCTATATGCGGAAaaacattccacaaaaaaaccATTTGTGAAAGGCACGAGTTTGCAGTACATCAATCGAAGGATCTGCCAAAGCAAAAATGTGATATCTGCGACTTTAGCACATCCAACGTTCTATCGTTGAGGTCACACATGCATCGTCATAGACGACCAGTTGAAAAGAATTACCTATGTGCCTTTTGTCCGATGAAATTCGTCAATCCAAAGAAACTTTACATGCACGAAGATTTTAAGCATGGCACTGGGGAAAGTGCCTACAAATGTGATATTTGCCAAAAGAAATTCATCATCAAACGAAAGCTTAGAGAACACAAATTATGCGTGCATGTAAGCGGCCGGCCATATGAATGTCCTGAGTGCAATAAAACATTTAAGAACGATTTCCAACTGAAGGCGCATCAGAAATTACATAGTAGTAGGCAAATTGACTGTTCGCTGTGCGACAAAAAGTTTGCTCGTCACGTCGACCTAAAAATTCATATGAGAACGCATACGGGCGAATTGCCATATGGATGTCATCTCTGCGACAAGCGATTTCCCATCAAAGTGAGACTCACATACCACTTACAAAAGCATATGGGTTTCAAACACAAGTGTCAACATTGTACAAGTGAATTTAATAGTAAATCGAAACTGAGGCTGCATATGTTTAAGCACATCGGAATGCCGTATGTGTGTGATCTTTGTCAAAACGGATACCCTAATCGAGTGGGtTTACGTCGCCATGCTAAAAGTGTTCACAAGATCATATTATCCGCTGACGACTTGGTCGAGAACCGTCGAAAAAACGTCAAGAACATACACAGTGAAATTGTAAACGACCTACTACCAATCAATGTTTCCATACCAGAAAGTGAGCTAgaaatttaa
- Protein Sequence
- MEPSIVCRACLSTISLEYIDLETPLYDDITFLECFNYCTKLQANLEDELPSNICVSCGRSLQIAYDFLKASLNADRVLRDSLPFFEDLHNLEENKNTLYDGDAVVKKEEESDDLDYNAEYIEEIENFDLDEMKEEVTEELPKFEVVISNEDVAIEETNDMWLSTDEDSNWPVSRLEEDNETIKCRICAKTIAKEEYDGHINMHIGSKEYKCDECDEKFFSENVMEMHRKAKHKSLERRGNFICGWCGEAFDCRSKLCQHRIIDHQGKAPSSCLTCGEEFSDEVNLRKHVKKAHGIPKKAVLCPYCNKEFKSIAQHIKLNHPDILRIPMPDDGSIKLSKNQCPYCFRLCQSKGILNDHINTHTGERPYSCSICGKTFHKKTICERHEFAVHQSKDLPKQKCDICDFSTSNVLSLRSHMHRHRRPVEKNYLCAFCPMKFVNPKKLYMHEDFKHGTGESAYKCDICQKKFIIKRKLREHKLCVHVSGRPYECPECNKTFKNDFQLKAHQKLHSSRQIDCSLCDKKFARHVDLKIHMRTHTGELPYGCHLCDKRFPIKVRLTYHLQKHMGFKHKCQHCTSEFNSKSKLRLHMFKHIGMPYVCDLCQNGYPNRVGLRRHAKSVHKIILSADDLVENRRKNVKNIHSEIVNDLLPINVSIPESELEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -