Basic Information

Insect: Criorhina ranunculi
Gene Symbol: -
Assembly: GCA_951813785.1
Location: OX638385.1:21476602-21478397[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.13 13 6.8 0.4 1 23 127 150 127 150 0.96

2 9 8.9e-05 0.0088 16.8 1.6 1 23 289 312 289 312 0.96

3 9 0.00019 0.019 15.7 1.9 1 23 317 339 317 339 0.98

4 9 3.6e-05 0.0036 18.0 0.1 1 23 347 369 347 369 0.97

5 9 1.9e-06 0.00019 22.0 0.1 3 23 379 399 378 399 0.98

6 9 1.4e-05 0.0014 19.3 0.5 1 23 405 427 405 427 0.96

7 9 0.00022 0.022 15.5 1.4 1 23 433 455 433 455 0.98

8 9 9.7e-05 0.0096 16.6 4.2 1 23 460 482 460 482 0.99

9 9 0.00087 0.087 13.6 0.8 2 23 493 515 492 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.13	13	6.8	0.4	1	23	127	150	127	150	0.96
2	9	8.9e-05	0.0088	16.8	1.6	1	23	289	312	289	312	0.96
3	9	0.00019	0.019	15.7	1.9	1	23	317	339	317	339	0.98
4	9	3.6e-05	0.0036	18.0	0.1	1	23	347	369	347	369	0.97
5	9	1.9e-06	0.00019	22.0	0.1	3	23	379	399	378	399	0.98
6	9	1.4e-05	0.0014	19.3	0.5	1	23	405	427	405	427	0.96
7	9	0.00022	0.022	15.5	1.4	1	23	433	455	433	455	0.98
8	9	9.7e-05	0.0096	16.6	4.2	1	23	460	482	460	482	0.99
9	9	0.00087	0.087	13.6	0.8	2	23	493	515	492	515	0.96

Sequence Information

Coding Sequence: ATGTTGATGTCCGACGAAGATTGCCAAAATGATGACGATAGTACCCAATGGGAAGATAGAGTAAACTACCGCCAGTGTATTACTGAACTGCTTGATATGTATCGCAAATGCATTGGTTTATGGCACAGTAAAACTGTACACAATATTTCTTACAAAGTTAAGACTGATGCACTCAAACTTTTGTTGGACAAATATTCTACATATTATCCAGATCGCAGTTTAAATGATCTACACAATCTGTTGAACGTCGTGACGAAACGATTCAAGAGAGAATTAGAAAACGAAGATGGTTGCCAACCCAAACCATGGTATTTCAATCATTTAACGTTTTTACGTTTTGCCAACGATGATAGGATATCCGATGAGAAATTCAAGGATTTTAATTGTCCAAGTTGTAAGCATAAAGGTTCTGGTTCAATAGATCTTTGGACACATATAGTTACTAACCATTTGAAAGGTGCAGAAGGAGATTCTCCATTGATAGAACAAACGTCAAAAATCTTCACTTTACAATGGCCCGAAGAAAACATCTTGCAATTCATCGAGCTCTATCGCGAACAAGAGTGCCTTTGGAATTTAAAGTCAAGATCATATCATAATCGTTTACAAAAAGCAAACGCCTACGGGATAAtcataaacaaattcaatgcaCTCTATCCGAATGTATTAAAAGATCGCGATGCAGTAAGAGAAGCAATCAGACATTTACGTGACTATTTTGGACGTGTTGATAAAAAGCATAAATCCTCTGATCCGCTTGATATGAATGCTACCACTGTTCCgcccaacaaatttaaaatctatAAACAACTTTTATTCCTTAGAAATGTCTATACACCAAGACTTAACTCAAATGAACAAGTCTACACATGTGAATTGTGTAATGaaactttcaataaaaagaaagaattcaATGTTCATACAAAAGAAGAGCACCGCGATGCGAGGTATACATGTGACAAGTGTCCACTAGTCTTTAGATCCCACATAAACATAACGACGCACCGCAGAGAACACACTAAAAATGATGGAAAAACGTATGCATGTCCCATTTGTCATGAAAACTTTGAAAACTCCGAGGGTCTTGCAACACATTTAAACGAACATTTGCCtaaaaatttacagaaaaaaatttgtgaGATTTGCGGTGCAAAATTTGACGACCGCAGTAATCTGCTGATTCATATTCGACGCCATACCAATACAAAGAATTACAGATGTGATTTTTGCAACAAGGGCTTTGTAACTTCAACCGAACTCAAGTCACACGTTGTGGTGCACAGTAATGATCGACCGTTTGTCTGTGAGTTTTGTGGACTCCGATTTAAGTATTCAAATCGCTTGAATACCCACCGATTAATCCATGGCGAGCCTAAGTTCAAATGCATGGATTGTGATTTAAGATTTGTTTCAAAGCGGCATTTTACAGAGCATAAACGGGTACATGTATCTGCAGATGTGCCTTTAAAGAAAGTTACCTGTGATCTTTGTTCAAGTTTGTTTCGAAACAGGGATTCCCTTGCACGGCATCGGAGAAAAATTCATAATATAAAAATGCGAGAATACTGCAACCTGAGTACTGTGTGCTGA
Protein Sequence: MLMSDEDCQNDDDSTQWEDRVNYRQCITELLDMYRKCIGLWHSKTVHNISYKVKTDALKLLLDKYSTYYPDRSLNDLHNLLNVVTKRFKRELENEDGCQPKPWYFNHLTFLRFANDDRISDEKFKDFNCPSCKHKGSGSIDLWTHIVTNHLKGAEGDSPLIEQTSKIFTLQWPEENILQFIELYREQECLWNLKSRSYHNRLQKANAYGIIINKFNALYPNVLKDRDAVREAIRHLRDYFGRVDKKHKSSDPLDMNATTVPPNKFKIYKQLLFLRNVYTPRLNSNEQVYTCELCNETFNKKKEFNVHTKEEHRDARYTCDKCPLVFRSHINITTHRREHTKNDGKTYACPICHENFENSEGLATHLNEHLPKNLQKKICEICGAKFDDRSNLLIHIRRHTNTKNYRCDFCNKGFVTSTELKSHVVVHSNDRPFVCEFCGLRFKYSNRLNTHRLIHGEPKFKCMDCDLRFVSKRHFTEHKRVHVSADVPLKKVTCDLCSSLFRNRDSLARHRRKIHNIKMREYCNLSTVC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -