Basic Information

Insect: Criorhina ranunculi
Gene Symbol: -
Assembly: GCA_951813785.1
Location: OX638382.1:15011838-15014555[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.3 2.3e+02 2.9 0.5 1 23 166 188 166 188 0.89

2 13 0.0026 0.26 12.2 1.2 1 23 198 221 198 221 0.97

3 13 0.00021 0.021 15.6 1.2 1 21 227 247 227 248 0.96

4 13 0.017 1.7 9.6 0.3 2 23 287 308 286 308 0.95

5 13 4.6e-06 0.00046 20.8 0.9 2 23 313 334 312 334 0.97

6 13 8.4e-06 0.00084 20.0 0.3 1 23 340 362 340 362 0.98

7 13 0.00038 0.038 14.8 2.9 1 23 368 390 368 390 0.98

8 13 2.8 2.8e+02 2.6 0.2 1 23 607 632 607 632 0.92

9 13 0.0077 0.77 10.7 0.2 1 23 638 660 638 660 0.97

10 13 0.032 3.2 8.7 2.5 1 23 665 687 665 687 0.99

11 13 2.8e-07 2.8e-05 24.6 0.8 1 23 693 715 693 715 0.99

12 13 0.00095 0.095 13.5 1.7 1 23 721 743 721 743 0.99

13 13 0.00021 0.021 15.6 0.3 2 21 750 769 749 770 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.3	2.3e+02	2.9	0.5	1	23	166	188	166	188	0.89
2	13	0.0026	0.26	12.2	1.2	1	23	198	221	198	221	0.97
3	13	0.00021	0.021	15.6	1.2	1	21	227	247	227	248	0.96
4	13	0.017	1.7	9.6	0.3	2	23	287	308	286	308	0.95
5	13	4.6e-06	0.00046	20.8	0.9	2	23	313	334	312	334	0.97
6	13	8.4e-06	0.00084	20.0	0.3	1	23	340	362	340	362	0.98
7	13	0.00038	0.038	14.8	2.9	1	23	368	390	368	390	0.98
8	13	2.8	2.8e+02	2.6	0.2	1	23	607	632	607	632	0.92
9	13	0.0077	0.77	10.7	0.2	1	23	638	660	638	660	0.97
10	13	0.032	3.2	8.7	2.5	1	23	665	687	665	687	0.99
11	13	2.8e-07	2.8e-05	24.6	0.8	1	23	693	715	693	715	0.99
12	13	0.00095	0.095	13.5	1.7	1	23	721	743	721	743	0.99
13	13	0.00021	0.021	15.6	0.3	2	21	750	769	749	770	0.94

Sequence Information

Coding Sequence: ATGGACGAAACTCTGTTTAACATCAATCTCCTGGAACCCCTAATTAAATTTGGTGGAACAATTTCAGAGAGGATATCAAAGACAGAAGCGGCGTATACGCGAGTATGTCGTACATGCCTCTGTGAAACGACGGACAACAATTTGGAAAGTAATTCATTTCTCACAAATGATCACCATGGATCATTGGTCACAATTAAAGAAATGATGGAAGTCTCTACAGGATTGGAGATTAATGCAGAGGATAAGTTACCTCATCATATCTGCGATGGTTGTCTGAAGACTGTAGAGGCTGCTTATTCATTTCGTACACAAAGTCAGCGAATAGATGAGGTGCTTAATGGATTCCTTAGGGAAATGTACTCCATAAAAGATGAGAAGCCCTCCGAAGGTGAATCAGTTTCTTCCACAGGTGGGGAGATTATCATAAAACCTGAAAAAATCGATGAACCACCCGACATCGAACTAGATGCTGACGATGTGTTGCCTACTTCTAGTTTCCACTGTGATCCGTGTAATATGAATTTTCCAATTCAAGATGACTTCGTCAAGCATAATGCCGAACACGGACCAACAGGTAGtaagaaaaagcttttcaaatgtGGAATTTGTGCAAAGGAATACAGTTTCCGCAATGGACTACATAATCATCTAATGATTACTCATATACAGAAGAAGGAATACCAATGCCCAGTGTGTCGCAGAATATTCAAGAAGAGGGATAGATTGCAGCAGCATCGGAAATCATATTGTATCGCTCCAGCAGCAATACCCAACGAGTCATCATTATCTGTGGTTACGGTTTATCCTGCTGAAAAATCTACGAAATCGGACAACGTAGTAGTTGAGATCAAGAATTTAACCTGTTCTTTGTGCAAAGAGaaatttGAGCTGGAATCTGACTTTAACGGCCACATGTCTGCACACGTGGCAGACAAAGAGTGTGACTTTTGCAAGAAATCATTTAGTCGAGCGACTTACTTAGAGAGTCATATTCGAGCTCATACAAACGAAAAACCATTTGTGTGTCCAATTTGTGCAAAAGGTTTCACTTCAACTCGAACGTTGCGCAGTCATATTAAAGTTCATTCCCTGAGAGCAGTATTCACCTGTGATAGATGCGAGAGAAAGTATTACACCGAAAAGGAACTTCGGAAGCATCTTACCACAcataaaaataagcaaaactcCGTTAATTTGGAGGAAACGGCTGAGATTATGTCGTGCGCTGAAgatatttcattaaaatcgaATGATAGTAAAAATCATTTGTATAAGGAAGAACCAGACAGTGCTTTGAAATCAAGTCCAGTCGAAATGGGAGGATTGTCAACAATTTCTAGTTCAAATAAAGATAGAACTGATCAAGAAATTATAATGAAACCTGTAGTGATAGATTCATCTATTTGCAAAATGGAACCAATGGACTTTGACACAACGGAATCTATTTGTATTAAGGAGGAAAACATTGAAGCCCCAAACCAACACGTAGAATCAGTTTCAGATGAAACCTTCTGGGAACAACCACCAGATGGATTCGAGATTATTATTAAGGATGAGAAATCTGACGCGCTTAAGATTGCCAATGAACCGATCAGTGACGATGAACAATCATTAGTTGATAATCTCGAGCAAACCATCACAGAAACATCAGAAGCAGTAAGTCCCAACATAATCATCGATAATGTGAAACAAGAAATATTCGACGATGACCAGCGAACATTAAATACCAGCAACGAACTGCCCAGCGGTGATGAAACGTCATTAGATCAGTCCAAACCAAGTCTTCTTCCGGTAACTCCGGCAGAAGTTTTCGGTAGGTTTGTATGTGGAGTTCCCGAATGCACAGCGGTATATAGATTTTATCGAGAAATCATCAACCACTACACAAGGCAACATTGTTCTGGTCCGCCGTTTGCATGCCCTGTGTGTACAATGTTGTTTCCTGTAAAACGAGAAGTGCGCAATCATCTGAAATCGCATATAACTTGTGAATACAAGTGTCCGTGTTGTTCCAAGGGATACCTGACGTTACGTgacttaaaaattcatttacgaacacataccggtgaacgaccATTTAAATGTCCAAAATGTCCCAAAAGATTTAAGCAACGACCCGCTTTAAAGGTTCACATTACCACGCATAACATTTGTAAAGAATACAAATGCGGTATTTGTTCGAAAGAGTTCTTTTCGTACAATGGTTTATTTTTGCATACGAAAAGCCACAAGGAAAACAAGGAGTTACAGTGCCCATTTTGTGCAAAACAGTTTCCAACAAAGAGTCGACTGCAACGACATCAAAATGGGGTTTGTGGCAGTCGGACACCGGCTAAAAGTTAG
Protein Sequence: MDETLFNINLLEPLIKFGGTISERISKTEAAYTRVCRTCLCETTDNNLESNSFLTNDHHGSLVTIKEMMEVSTGLEINAEDKLPHHICDGCLKTVEAAYSFRTQSQRIDEVLNGFLREMYSIKDEKPSEGESVSSTGGEIIIKPEKIDEPPDIELDADDVLPTSSFHCDPCNMNFPIQDDFVKHNAEHGPTGSKKKLFKCGICAKEYSFRNGLHNHLMITHIQKKEYQCPVCRRIFKKRDRLQQHRKSYCIAPAAIPNESSLSVVTVYPAEKSTKSDNVVVEIKNLTCSLCKEKFELESDFNGHMSAHVADKECDFCKKSFSRATYLESHIRAHTNEKPFVCPICAKGFTSTRTLRSHIKVHSLRAVFTCDRCERKYYTEKELRKHLTTHKNKQNSVNLEETAEIMSCAEDISLKSNDSKNHLYKEEPDSALKSSPVEMGGLSTISSSNKDRTDQEIIMKPVVIDSSICKMEPMDFDTTESICIKEENIEAPNQHVESVSDETFWEQPPDGFEIIIKDEKSDALKIANEPISDDEQSLVDNLEQTITETSEAVSPNIIIDNVKQEIFDDDQRTLNTSNELPSGDETSLDQSKPSLLPVTPAEVFGRFVCGVPECTAVYRFYREIINHYTRQHCSGPPFACPVCTMLFPVKREVRNHLKSHITCEYKCPCCSKGYLTLRDLKIHLRTHTGERPFKCPKCPKRFKQRPALKVHITTHNICKEYKCGICSKEFFSYNGLFLHTKSHKENKELQCPFCAKQFPTKSRLQRHQNGVCGSRTPAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -