Cran014179.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:28278780-28282427[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.38 38 5.3 0.6 2 23 174 196 173 196 0.95 2 18 0.0023 0.22 12.3 3.9 2 19 239 256 238 259 0.92 3 18 0.24 23 6.0 1.9 2 23 270 291 269 291 0.88 4 18 0.053 5.2 8.0 0.1 3 23 300 321 299 321 0.95 5 18 0.0031 0.31 11.9 2.5 2 23 328 349 327 349 0.96 6 18 2.2 2.2e+02 2.9 6.5 1 23 355 377 355 378 0.94 7 18 0.00026 0.026 15.3 5.1 2 23 385 407 384 408 0.95 8 18 0.00082 0.082 13.7 0.1 1 23 455 477 455 477 0.97 9 18 0.011 1.1 10.1 0.3 1 23 482 504 482 504 0.98 10 18 0.84 83 4.2 0.2 1 23 520 544 520 544 0.94 11 18 3.7e-05 0.0037 18.0 0.6 1 23 550 572 550 572 0.97 12 18 0.24 24 5.9 1.3 1 23 578 601 578 601 0.95 13 18 0.001 0.1 13.4 0.2 2 23 607 629 606 629 0.94 14 18 2.9e-05 0.0029 18.3 4.3 2 23 633 655 632 655 0.96 15 18 1.1e-05 0.0011 19.6 0.9 1 23 661 684 661 684 0.97 16 18 0.0017 0.17 12.7 2.1 1 23 690 712 690 712 0.99 17 18 0.0018 0.18 12.6 4.7 1 23 718 740 718 740 0.98 18 18 0.00041 0.041 14.7 0.1 1 23 746 771 746 771 0.95
Sequence Information
- Coding Sequence
- ATGGATTTAAAATGTTTACGATGTAATACCCCATTGGTAAATGATTACCAGTTAATATTTGATGAAACTGGAATCGAACTGCAATTGGACAAACTTCTGGCTGAGTACTTTGATATCTTTATCCAAATTGATTTCAAAGCAACACAAGCTCTATGCGAAGGATGTGTGAATAAACTCATTGAATTGTACGATCTAACACAAAAGGATCAAGAATTACAATTGCCTCAGAAAGAAACAATCGATGTAGAAGAAGTTGACATTCCGCtcaaagaagaacaagaattTATTATTGAGGAATTGGAACCAGAATCGGAGCAAGACAATatcgaaataaataaagaatcaaACTCAGATGATGATAATGAGGAATTCTTAGGATTTGATGATGAAATCGAGGATAATTTAACTAGTTTCGAAAACATTCAGTACCTGGACGAATTAAATGGTATCACAACAAATGAGTACGTACGTAAGGTAATAAAAAGTGAACTGCAAGAGATAACCTTTGACCAAAATACAGTGTGCAAGTTGTGCAATGAAGTTTTGAAAAGTCATACCGCAGTTCTAATGCACGTATCGACAAATCATGAAACTATGTCTAAGACATATCCATGCATTATCTGCAACAACGTTGACCATTTCGATTCAATTGACGATTTGGCTTTTCACATTGTCCTGAAACATTATAACCTGGAAGTAATAACCATCTATTGCATGTGTCCCGAGTGTGGAAAGAGGTTTACCACTTTCGTTGAGTACAATAAACATTCATGCTATAAGGAGAAAGTCGTAAATCGATTGCTACAAGAATGTGAAGTCTGCTCAAAAGAATTTACTTCCAATAAGAGGTATCGTTTTCACCTACAATTCCATCTGGATAAACGAAGACCCAAAGCATGCTTCATGTGCGATATTTTATTCTCCGATGAGAATGATTTCTTTGAGCACATAATGTACGCCCATGAGAAGCAGAATGCATTGATATGCAAAAAATGTGATCGAGTTTGCACTTCGAAGCAACTTTACGATAACCACATAAAATTGCACTATGCTGTTCGATCGTTCCACTGTAAATACTGCTCAAAATCGTATTTGTACAAGCAAATACTGATGAACCATATACAAAGGCATCATACTGAAAAAGACTCCAATAAATGTGAAATCTGTAAGAAATCTCTAGCGAGTAAGCACCTTCTCAAGAGGCATATGCAACTTAAACATCACGAAGAGACGGAAGAAAATGTTTACGTGTGCTCGACGTGTGGATTCATTGGAAACTCAGAATATGATGCAAAGTTTCATATTTCAGATAATACTGAGTGTCCAGATGCAGATGTTACTAGTGAGTGTTTGAAGATTGCATACGCTTGTGAATTCTGTGAGCTTGCCTACAATAGTGTGGAAAACTTGAAAGCTCATCGAAAGATTCACACCAAAAATCGATATATATGTTGGATATGTGAGAGTGAATATACGGAATACAAGAAACTGAAGACGCACATCATCACACACGACAAATATGACCCAATTCAAGACACATTTCCAATCAACAGGCATTACGTATGCAATTTTGATTCTTGCGAACAATCCTATCTAACATGGCCATCATTAAGAGCTCACAAAGGTCGACATACATCCGGCACTAAGTTTTCTTGTGACGTTTGTAGCCAAGCATTCAAGTCGCAAACGCTATTAAACACTCATCTGAAAGCTCATGATAATAACGAAGAATACCCTTGTCAATTTTGCTCAAAACTGTGCCAATCACAAATGTCCCTAGCAGTACATGTCGCACGAAAGCACAACAACAATTGTAAAACGTGCGCCTATTGCAACGCGACATACACTACCGAAGAAACGCTTCAAGAGCACATCAATGCGAACCACGTCGAATTGAAATGTGAACACTGCGATAAGATATGCAAGAACAAGCGAAATCTTGAAATACACACACGAATGGTTCATACCAAAGTTAAGAGGTTCTTTTGCACGACCTGTGATAAAGGATACTACAATAATAGCGATCTAAAGGTTCACGAAAGAACGGCTCACTCGGAATCACACAAGTATAAATGTCAGCAATGTGACTTTACGACAAGCTACGAGACATCGTTTAATGCTCACCTTCTAAAGCACGACTCCAATAAGCCATTCAAGTGTGCGGAGTGCTCAAGGGAGTTCACCAGGAAAACGTGCTTTAAACTACATGTGTTAAGACATTCCGATGTCAAACCGTTTCCTTGTCCAGTTTATGATTGTGGAAGGAGTTTTGTAACAAGGGGGATACTTAACTCACATTTGCGTGACACCCATCCGGAATGCGATACCAAACTGGCAAGCAATTCTCCTGTACCGTTAAAGCGGAAAAGACATAACGCCATACAAGCTCCAAAACGTGCAGCTAAGCATGTCATCgttgaagaagaagacgatGGCTTGGTTATTTTTGATGAATCAAATGCTGGACAAGAAATAGTGCTGGAATGCGCCGATGAGGGCAAGGATTTGATCGTGGATTTAAATCAAACCGAAGTAGATAATGAATATACAGTGGATCAGTTATAG
- Protein Sequence
- MDLKCLRCNTPLVNDYQLIFDETGIELQLDKLLAEYFDIFIQIDFKATQALCEGCVNKLIELYDLTQKDQELQLPQKETIDVEEVDIPLKEEQEFIIEELEPESEQDNIEINKESNSDDDNEEFLGFDDEIEDNLTSFENIQYLDELNGITTNEYVRKVIKSELQEITFDQNTVCKLCNEVLKSHTAVLMHVSTNHETMSKTYPCIICNNVDHFDSIDDLAFHIVLKHYNLEVITIYCMCPECGKRFTTFVEYNKHSCYKEKVVNRLLQECEVCSKEFTSNKRYRFHLQFHLDKRRPKACFMCDILFSDENDFFEHIMYAHEKQNALICKKCDRVCTSKQLYDNHIKLHYAVRSFHCKYCSKSYLYKQILMNHIQRHHTEKDSNKCEICKKSLASKHLLKRHMQLKHHEETEENVYVCSTCGFIGNSEYDAKFHISDNTECPDADVTSECLKIAYACEFCELAYNSVENLKAHRKIHTKNRYICWICESEYTEYKKLKTHIITHDKYDPIQDTFPINRHYVCNFDSCEQSYLTWPSLRAHKGRHTSGTKFSCDVCSQAFKSQTLLNTHLKAHDNNEEYPCQFCSKLCQSQMSLAVHVARKHNNNCKTCAYCNATYTTEETLQEHINANHVELKCEHCDKICKNKRNLEIHTRMVHTKVKRFFCTTCDKGYYNNSDLKVHERTAHSESHKYKCQQCDFTTSYETSFNAHLLKHDSNKPFKCAECSREFTRKTCFKLHVLRHSDVKPFPCPVYDCGRSFVTRGILNSHLRDTHPECDTKLASNSPVPLKRKRHNAIQAPKRAAKHVIVEEEDDGLVIFDESNAGQEIVLECADEGKDLIVDLNQTEVDNEYTVDQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -