Cran016606.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:59336452-59339075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00019 0.018 15.7 0.2 2 23 15 36 14 36 0.97 2 16 0.56 56 4.8 5.6 1 23 42 65 42 65 0.92 3 16 0.00098 0.098 13.5 0.2 3 23 70 91 68 91 0.94 4 16 0.017 1.7 9.6 0.1 3 21 101 119 99 120 0.91 5 16 6.6e-05 0.0065 17.2 0.8 1 23 128 150 128 150 0.97 6 16 0.0016 0.16 12.8 2.0 1 23 156 178 156 178 0.97 7 16 0.00024 0.024 15.4 2.6 1 23 184 206 184 206 0.95 8 16 0.86 85 4.2 4.7 2 22 213 233 212 233 0.93 9 16 0.068 6.7 7.7 1.7 1 23 540 562 540 562 0.95 10 16 0.073 7.2 7.6 3.3 1 23 570 594 570 594 0.95 11 16 0.00035 0.035 14.9 0.2 2 23 599 620 598 620 0.97 12 16 0.00063 0.062 14.1 0.3 2 22 632 652 631 652 0.93 13 16 0.0003 0.03 15.1 1.2 1 23 660 682 660 682 0.96 14 16 1.9e-05 0.0019 18.9 3.6 1 23 688 711 688 711 0.97 15 16 6.3e-05 0.0062 17.2 0.2 1 23 717 739 717 739 0.98 16 16 0.0022 0.22 12.4 1.1 1 21 745 765 745 766 0.94
Sequence Information
- Coding Sequence
- ATGATGGTTCAAATAACAACAGACAAATCCGGACCCAAGCTAGTATGCCCTATTTGCAATAAATCCCTTATATCCCTTAATGGCTACGTGAAGCACATGAAAAAGCATGAACCACCTGGAGGATTTTGTTGTAACTACTGTGATGATCGTTTTTGCCTAGAGGAACTCCTCAAGAAGCACAGAGATGAGAAGCATAAAGTGCTCGCCTGTCAGATATGTCATGCAACATTCACAACCGCCCTTGAATACCGTGCCCACATCAAGGACATTCATAAGGGAGTCGATCGGCCGATGTCGATTTGCGGAAAATGTGGAATAGAATTCAAAACCCCACAAGCAGCTAAAAGACACAAGGAGACGCAGTGTGGTCAAATAAAACCACATCCATGTGATGAGTGTGAAATGGCATTTTACACAAAGTATAACCTTGCGGAGCATAAAAAGATCCATAGGGGTGAAAAGAAATTCTGCTGTAGTTACTGTGGAAAGAGTTTTCTTAGCAATGGACGACTGGTGATACACGAAAGAAGTCATACAGGGGAAAAGCCTTACAAGTGCGATGTTTGTGGAAAATGCTTTGCTCATCGCGAGAGTATCGTCACACACTCATCAATCCATACCGGAGTCAAATTGGTCGTCTGCAAGTGCTGTGGAGCACGGTTCTCATGTCATTCGAATCTGATCAAGCACCGACGAACGAGACAGGATACTTGTGGTCTAGCAATTTACGACTCTACTAAGGAAACCAAACGAACTCGAAACTCAAGAAttCCGGCCAGCTTAATGTTATCTGAGATAAAAATCGTTCGTGCCAGTAAAGTAATTAACCCCAACGAAGAGCTAAAGAAGCCTAGAGCTCCCAAGTCCACCATTTCCAAGACGAAAAAACCCAAGTCCGACTCTGATGAGGAAGAAGTGATTATCAAAAGACCAAGAGGAAGTCAGCGAATAGAAGAACCTGCCTCTAAATCCACAGAAAAGCCAGCTGAGACTCCTAACGATGACAATGAGTCCTATCACTATGACGATGATCTGACATTTGAAAGTGCAATGGACTCGGATGATTCTTTTCACAGTGAGAACCAGGATATTAAACCTACCAGCACGGATATTGTTTTAGAGGATATCTCAGTAAAGACAGAGGAAGAACTTAAGCCCGTGGACACCGACATTTTCATTGAGAAAGACAAAATCCTCGATGATCTACTCGCGGAAAGCAGCGAAACAATTAAAAACGAACCGCTGGTAAAAATAGAAGTAAAAGTAGAGTTGTCCGACCTAAAGAAAGATGATTATTCGCCTATCAAACGCTGTAGGGTTATTCTTGAAGAAGCAAGTGTAATATATCCTAACTTACAAGCTTTCTCACCAGCATCGCAACCCGCCAAATGTACGCAGAAGAGCACTACACCCAAGGTAAAGCGCCATCGTTCAGCTTTGCGTAAAAAACTGCGATTCTTCAAGAAAGATCGCACTTACGACTGTAAATTCTGCATGAAAATCTATCACATTAGAAAGCCCTATGAAAAGCACCTCAGCGAGCAGCACAACAAAACCGATAATGAGATACGTGCCATGTTcaaagaggaagaaaatgacATTCCCGCCGATTTGATACATCGCTGCCCGATATGTTCAAAAGTCTATTTGATGGCGAAACGACTGAAAACTCATATAACCTACCATGGTCCAGAGGGGAATCTTATCCACAAGTGTCCGTGTTACTGTAAAATCTACTTCAGCAACAAAGAAGAAGCCATGGAACACGCCAAGATCAAACATAAAACAGCTATTTATTGTGATATCTGCGACAAGTACACACAATCCCCAGAAGCTCTAAAAATCCACAAGCGCACTCACTTTCAACGAAGAAAGCAAACAGATCGGAATTTAATCTGCGACAAGTGTGCCAAGTCGTTTGCTAGTCGAACTTCTCTAAACGACCACACACGGTCGAATTGTGGACAAAATCCGTTGTATCACTGTGAAATCTGTGACAAGAAATTCAGCACAGCGGGGATTTTAAAAACCCATACATTGCTGCACAAGGATGAGACACCCTTTGTGTGTGATAAATGTGGAAAAgctttcaaaattcaatcgCAATACAAAACCCACTTGAGGCATAAACATTCCGATGAAAAACCATTTAAGTGTGAGCTATGTCCAAAGCAGTATCCCTATCGAGAAAGTCTACTCACACATATGGCAATCCATACAGGACTGAAACGATACGCCTGCAATGGATGCAGCAAACGATTTACATGTATTTCCAACCTACAAGCGCATCGAAAGGTTTACGCCGATACATGTGGACTTCAACCGTTGAATTCAAAACCCAGCCAATACATAGGCATGCAGAAGGGCCTGCTTTTAATGGGCACCAAACCGACATTTTAA
- Protein Sequence
- MMVQITTDKSGPKLVCPICNKSLISLNGYVKHMKKHEPPGGFCCNYCDDRFCLEELLKKHRDEKHKVLACQICHATFTTALEYRAHIKDIHKGVDRPMSICGKCGIEFKTPQAAKRHKETQCGQIKPHPCDECEMAFYTKYNLAEHKKIHRGEKKFCCSYCGKSFLSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGARFSCHSNLIKHRRTRQDTCGLAIYDSTKETKRTRNSRIPASLMLSEIKIVRASKVINPNEELKKPRAPKSTISKTKKPKSDSDEEEVIIKRPRGSQRIEEPASKSTEKPAETPNDDNESYHYDDDLTFESAMDSDDSFHSENQDIKPTSTDIVLEDISVKTEEELKPVDTDIFIEKDKILDDLLAESSETIKNEPLVKIEVKVELSDLKKDDYSPIKRCRVILEEASVIYPNLQAFSPASQPAKCTQKSTTPKVKRHRSALRKKLRFFKKDRTYDCKFCMKIYHIRKPYEKHLSEQHNKTDNEIRAMFKEEENDIPADLIHRCPICSKVYLMAKRLKTHITYHGPEGNLIHKCPCYCKIYFSNKEEAMEHAKIKHKTAIYCDICDKYTQSPEALKIHKRTHFQRRKQTDRNLICDKCAKSFASRTSLNDHTRSNCGQNPLYHCEICDKKFSTAGILKTHTLLHKDETPFVCDKCGKAFKIQSQYKTHLRHKHSDEKPFKCELCPKQYPYRESLLTHMAIHTGLKRYACNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSQYIGMQKGLLLMGTKPTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -