Cran017071.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638385.1:2288588-2292352[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 4.3e-07 4.3e-05 24.0 1.6 2 23 147 168 147 168 0.97 2 10 4.9e-07 4.9e-05 23.9 0.5 1 23 174 196 174 196 0.98 3 10 5.2e-06 0.00051 20.6 0.7 1 23 202 224 202 224 0.96 4 10 5.7e-06 0.00057 20.5 0.5 4 23 235 254 230 255 0.92 5 10 5.9e-05 0.0058 17.3 2.9 1 23 260 282 260 282 0.97 6 10 2.9e-05 0.0029 18.3 3.6 1 23 288 311 288 311 0.98 7 10 0.005 0.49 11.3 2.3 1 23 317 339 317 339 0.98 8 10 4.7e-05 0.0047 17.6 0.7 1 23 344 366 344 366 0.98 9 10 0.00048 0.048 14.4 0.5 2 23 373 397 372 397 0.96 10 10 2.3e-05 0.0023 18.6 0.9 2 23 538 560 537 560 0.93
Sequence Information
- Coding Sequence
- ATGGAGAGTATCTGCAGATTATGTTTTCAGCCAGCAGCGTTGTTTCAGGTTCCTGGCTATAATCTTCCAACCTGTGTCAAATGTTCGGAGCATTTGACCACAAATGGTCTAACAGCAAATTTCTATCAAACAATCAGACAGGATTTACCAACTGTTACAACTGCGGCAAATAATACAACTACACAAACGGTAACAACAAATGGTAGTGGATCCGCTATAACAACTACAATTCAAGTACTACAACAACCaccacaacagcagcaacaacagacAACAACGAACACAACCGACAGTCATCAAACAACTAATATAAATAGCCAACAACTAAGTGGTTCTATGTCCAATCAAAACGGCGtgaaaaaaaccgaaacaatgTCATTTGATTTGGAGAAGACCATTCAGACCATAGAcGTTGATCTACTGTTTAATGAGGAAGGATCATGTCCACTCTGTTCGAAGACGTTCTCGAGGAAATCGTCGTTACTGACGCACATACGAAACCATTCGGCTGAGAGAAAATATGTTTGCACGTTTTGTAATAAGGGCTTTACACAAGCGGCGAATTTGAGAAATCATGAGCGGATACACACAAATGATAGGCCTTATGTCTGCATCGATTGTGGCAAGACATTTACCCAGatAACAAATCTAAATAATCACCGTCGACTGCACACGGGAGAACGGCCATTTGTGTGCATCGAACCGGAATGTGGGCGGTCTTTTGCGCAAGTAACAAATCTTAACAACCACATGAAGACGCATCACAAAGTACAACAGTATTGTTGCAATCAATGTCCGAAGAAATTCACTCAAGTCACCTCACTCAATCAGCACCTGCAAGCGCATGCCGGCATCACTGGCTACTATTGCCCTCGATGTCCGGAGAAAACCTTCAAACAACAATCGCAATTACATACGCACATGAAGTCTCACGGCTTGGCCTTCCCCTACGAGTGTCAAAAGTGCGATGAGAAATTCCTGCAGCAAGCACACCTCGACCAACACAATAAAATGCACGacgaatttaaattcaaatgtgACATGTGCCCGAGCTCCTTCAATCAGGAGGTGCTCCTCAAAAAGCATGTACAACGCCACATCGAAGGGAGGTACATTACATGTCCGGTAGCTAATTGTAACCAAGCATTCGCCGTTAAACAACACTTATCGAAACATCTTCTTACTCGCCATTCTCACAGTGAACTGCCGCCGCCTAAGCGTTCTaaaaagcagcagcagcagcaacatcagcTCCATCAGCCGGTGCAAATGATTGGGCAGCCACTGTCGATACAACATCACACACCAGGGCAACGAGGTCGTCCGccaaagaagaagaatcaacaacaaattaatCATACAAACGTTCAAACAATTAAGATCGAACTGCCATCACAACACCAGCAGCATGTTGGCGGTGCTACAATTCAAATCAATCAtatgcaaccacaacaacaaactGGTGGCGCTGAAATTGGCAGCCATGTAAAAACAACAGTCGTGCAGGCAACATTgatcaacaataacaataacaacaatggtaacgagcaacaacaacaacaccaacaacaagaCCAACAACACGAACAAGTCGATAGCGGCGAAGATCTTAAATGCCATGACTGCGGTGTAGTATTTACAAATGAAAACGAACTGAGGGAGCATATATTCTACAAGCATCCCGAGCGGAGATTTATGCAGGTACTATTACAGAACGGTCACAATTCGATTTTGTCCGATGCTAGGAATTTGCTAATATTCAAGTATCAATAG
- Protein Sequence
- MESICRLCFQPAALFQVPGYNLPTCVKCSEHLTTNGLTANFYQTIRQDLPTVTTAANNTTTQTVTTNGSGSAITTTIQVLQQPPQQQQQQTTTNTTDSHQTTNINSQQLSGSMSNQNGVKKTETMSFDLEKTIQTIDVDLLFNEEGSCPLCSKTFSRKSSLLTHIRNHSAERKYVCTFCNKGFTQAANLRNHERIHTNDRPYVCIDCGKTFTQITNLNNHRRLHTGERPFVCIEPECGRSFAQVTNLNNHMKTHHKVQQYCCNQCPKKFTQVTSLNQHLQAHAGITGYYCPRCPEKTFKQQSQLHTHMKSHGLAFPYECQKCDEKFLQQAHLDQHNKMHDEFKFKCDMCPSSFNQEVLLKKHVQRHIEGRYITCPVANCNQAFAVKQHLSKHLLTRHSHSELPPPKRSKKQQQQQHQLHQPVQMIGQPLSIQHHTPGQRGRPPKKKNQQQINHTNVQTIKIELPSQHQQHVGGATIQINHMQPQQQTGGAEIGSHVKTTVVQATLINNNNNNNGNEQQQQHQQQDQQHEQVDSGEDLKCHDCGVVFTNENELREHIFYKHPERRFMQVLLQNGHNSILSDARNLLIFKYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01521342;
- 90% Identity
- iTF_01116602;
- 80% Identity
- -