Cran013829.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- grau
- Assembly
- GCA_951813785.1
- Location
- OX638384.1:19681540-19689665[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.025 2.5 9.1 0.3 2 23 454 476 453 476 0.96 2 17 0.043 4.3 8.3 0.7 6 23 485 502 485 502 0.99 3 17 0.0022 0.22 12.4 1.9 1 23 508 530 508 530 0.98 4 17 5.6e-05 0.0056 17.4 1.5 1 23 538 560 538 560 0.99 5 17 0.0039 0.39 11.6 0.2 2 23 567 589 566 589 0.89 6 17 6.5e-06 0.00064 20.3 1.0 3 23 597 617 596 617 0.96 7 17 0.00051 0.051 14.4 0.4 2 23 626 648 625 648 0.95 8 17 0.0003 0.03 15.1 0.1 1 23 655 678 655 678 0.94 9 17 0.0055 0.54 11.1 0.3 1 16 684 699 684 700 0.87 10 17 1.7e-05 0.0017 19.0 1.6 1 23 1002 1024 1002 1024 0.99 11 17 0.046 4.6 8.2 6.3 1 23 1032 1054 1032 1054 0.98 12 17 4.1e-06 0.0004 21.0 0.3 1 23 1062 1085 1062 1085 0.96 13 17 0.0037 0.37 11.7 0.2 3 23 1093 1113 1092 1113 0.96 14 17 4e-05 0.004 17.8 0.7 2 23 1122 1144 1121 1144 0.97 15 17 0.00038 0.038 14.8 0.2 1 23 1151 1174 1151 1174 0.94 16 17 1.1e-06 0.00011 22.8 1.0 1 23 1180 1202 1180 1202 0.98 17 17 2.7e-05 0.0027 18.4 5.0 1 23 1208 1231 1208 1231 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGCTCTGCATTTTATGTCTGACCATGTCTAATCAAGTAATATACATTTTTGAGGATGATGGGCTCCGCCTTAACATCAGCAACATTATAACTCGGTATTTTCGGCTGACGCCAAGTCTAAAAGAAGCTAACGCCAAAGTTATCTGTTGTTCCTGTTGGGCCGACTTATCTGCTTTACACAAATTCTGCCAAAAGATTGAGGAAGCTCATGCTCACTTAGATAATGTAAAACTTACAACAGAAGATGATACAATTCAAATTGATAACTTGGATACATGCACTGAGACTCTTAGTGAAGGTATCTCAGTTCCGattaatgatgatgatgcatgCCCTGTACCTGATCCCTTAAGCGAAGTTCTAGATATTGGATTGAAGACATGTGAATCTTCTGGAAACGATTTGCCGGATTCCAATATAGAAAAACCAGTTGAGCAACTAGATGTTGAGAATAGTGATGAAATAAGAGTACTAGAAATAGAGTCTAGTCCTTCAGTTGATTCCAATAAACAAGAAAACTCGTCACTGGAAAACAAATCTGTCACTGACGACTCGCAAGATGAGGGAAGCGCCCTTAACATCAGCGAAATCATTGTACAACACTTTTGGCTGCAGCCAAATGTAAACGACGTGAATGCAAAAGTAATTTGCACATCCTGTTGGAGGACATTGGATTCATTTCATAAATTCTATCTTCGTGTGGAAGGAGCCCATGCTAGACTGGAAGAAGCCTTTATTATCGAAAAGGATGAGTTGAAGTCAGAAAACGATTCTGCTTCGACTAGAGTGACTGGCACTGAACACTTTGAGGAAGTATTACCGGAACTATTGAATGCAGACATAAAACTAGAAGTTCAGGAAGATGGGGAAGTTAAATTGCCCTCAGACCTAACAACAGCTAACagtgaaaagaaaactgaatctccaaaaaaatcaaatctgaAAAGAAAGCATTCCACCGATTCCGAGAGGTCGGCAGAACATGAAGATCCACCCGCTAGCTCTACGAGAAGTCGTACTTCAGCGGAGAAGGCCTCCACGGATAGCGAGTCTTCCAGTGACGAAGAGAGAGACAATGACAATGGTGAAGTTGAAAGACGAAATTCAACCCCAGACTGGCATGGTCAAGACTCGGACAATATCGACGAGGACAGTGACTATGAGGACAGTTCATCGAAAGCGAAAGCGAAAAAGCTGAAGGAACCTTCGAAAGTAACTAAAAAACGTGGTCGACCGAAGAGAGGTGAAATAAGGGACTCGCCTCGCATGGAAAAACCAATGTCAGCAGAGCAATCGAAGAAAATGCAACGAATTCGTGAGTTTGACGAAATGATTTTAAAGAACATAAAGCTATCGTGTGCTGTTTGTTTGACATCATCTCCTAACTTTGCCACTCTAAAAAGACACTATCGTACCGTACACAACGAATGCGGCTATGCCAGTTGTTGTGGCAAAAAGTTTCGTAAGCGCGGGGTCCTCGTCGATCACATTCACACCCATGAAAATCCGGAATACTTCAAGTGTGAGCAATGTGGAAAAGTGTTGACCAACAGAAAGGGTCTGGATTGTCACATGTTAACCCATAACACTGAAAAGCAGCGCACCTATCAATGCGATCAATGTACATTGAGTTTCTTTACTAAGCCGCTGCTGTCACGACACCTGCAAACGCACATTTCCGAACGCAACATCAAGTGTCCAGAGTGCGATAAGTTTTTTCCGACACAGGATATCGTGCGTACACACATATACAATGTCCACAATGTATCCTTCACTAGGATCTGTGATCAGTGTGGAAAGTTCTTCCGCCGACCAGATACATTCCGTCGGCATCAATTGGAGCATGACGGTATAACTCAGCCGCTTGTTCCATGTGAGAAATGCAACGTGAAACTGACAAGCAAATATGGTCTCAAAAGACACATGGAAtcaatgcatcccgaaacaGAAATGACCCATGTGTGTAATACTTGTGGTAAGGTGGCACCAAGTGCCGCAGCATTGCAGCGGCATATATCCTACATGCACAAAATGGAACGCAAGTATAAGTGTCCCATGTGTGATAAGGCTTTCAAGAAAACCGGTGGACTCAAGCCGGATAAAAATAACGATAATGCAAGGTTTATCTGCAGCACTTGCTGGGAAGCTCTGGATTCATTTCATAAATTCTACCAGCAAGTGGAGGAGGCACACATAACTTTGGCCAAGAAAACTCCTGTGGAGGATGAAGGTTTGAAATTGGAAAGTGATCAAACGGCAATACAATCAGAAGCAGAGGATGTTGAAAAATTCGATCCAATTTCGGATTTTTTAAATGCAGACGTCAAGCTAGAGGTAAAGGAAGATGCAGATATCACTCTACCTCCATATGACGCACTTCCCGATGTCGAGGAGAAAATCAACGTTAACCATATCGAAAAAGCAAAAGGAACGAATTCATCGGATTCCAGCGATTCCGATGATTCGGACGACTCTGAATCCGAAATTCCACTTGCAAACTTAGCCAAGGCACGTTCCAGGAAAAGAGGCAAAACAAAAGAAGCTACATCCAGTAATGATGATGTTGAATCATTAAACGAGTGGCAAGACCACCACTcaaacaacgacgatgatgatgtcgatgatgacgatgacgacgatgagagTGACTTTGAAGTGAAAAAATCGAAACCGATtcgaaagaaaataataacaaatacgGGAAAGAAACGCGGTCGACCATGCAAAAATGCACCAAGAAGAGACACGGCTCCAAAACAAATCACAGAAGAGCAGATTAAAAAGCGGGAACTCTCGCATGAATACGATGATATAATAGAAAAGAACATGAAGCTGGTGTGTAATGTTTGCCTAATACCGCTGGCgaactttttcattttaaagaagCACTACCGCGCCAAACACAACGAACGAGGTTATGCCTCTTGCTGTGGAAAGAAATTTCTTAAGCGCGGCATTCTGGTCGATCATATTTACACTCATTTGAATCCCGAACACTTTAAATGCGACAAATGTGATAAGGTTCTGGCCGATAGACGATGTCTCGAGGTGCATATGAATACGCACGTTATGGAGAAGCAGCGCCTCTACCAGTGTGACCAGTGTTGTAAGAGTTTCTTTAAGAAACCACTGCTTACACGTCACTTGCATATTCACATCCCTGAGGAGGAGCGTAAATTCCCCTGCGAGGAATGCAATAAGTTtTTCCCATCGAACTATACGTTGCGAGCGCACATCAACAATGTGCATCAGAATGCGTATGCAAAAATCTGCGATCAATGCGGCAAGTCGATACGCGGACGAGAAGCATTCCAAAGGCATTTGCTGGAACATGCTGGTGTGCCAATACCCAGTGTACAGTGTGACAAGTGTGGAGCGAAATTAAAGAACAAATACGGTCTAAAAAGACACATGAATTCGATGCACACTGAGTCGAATGTGCCTCATGTTTGTAATTTATGTGGCAAAGTGGCGCCTAATTCGGCTGCATTGCAGCGCCACTATTCGTATGTGCATAAGTGCGAGCGTAATCATAAGTGTCCTATGTGCGATAAAGCCTTTAAAAAGGCCGGTGGACTTAaggagCACATGACAACGCACACCGGAGAAGTTCTCTACACGTGTCCACATTGCCCGAAAACGTTCAACTCCAACGCCAATATGCATTCACATCGAAAGAAAATGCACCGCAAGGAATGGGAGGAGAATAGAAGGCATCCACACATGGGATCTTCTGCGAACGCGGAATAG
- Protein Sequence
- METLCILCLTMSNQVIYIFEDDGLRLNISNIITRYFRLTPSLKEANAKVICCSCWADLSALHKFCQKIEEAHAHLDNVKLTTEDDTIQIDNLDTCTETLSEGISVPINDDDACPVPDPLSEVLDIGLKTCESSGNDLPDSNIEKPVEQLDVENSDEIRVLEIESSPSVDSNKQENSSLENKSVTDDSQDEGSALNISEIIVQHFWLQPNVNDVNAKVICTSCWRTLDSFHKFYLRVEGAHARLEEAFIIEKDELKSENDSASTRVTGTEHFEEVLPELLNADIKLEVQEDGEVKLPSDLTTANSEKKTESPKKSNLKRKHSTDSERSAEHEDPPASSTRSRTSAEKASTDSESSSDEERDNDNGEVERRNSTPDWHGQDSDNIDEDSDYEDSSSKAKAKKLKEPSKVTKKRGRPKRGEIRDSPRMEKPMSAEQSKKMQRIREFDEMILKNIKLSCAVCLTSSPNFATLKRHYRTVHNECGYASCCGKKFRKRGVLVDHIHTHENPEYFKCEQCGKVLTNRKGLDCHMLTHNTEKQRTYQCDQCTLSFFTKPLLSRHLQTHISERNIKCPECDKFFPTQDIVRTHIYNVHNVSFTRICDQCGKFFRRPDTFRRHQLEHDGITQPLVPCEKCNVKLTSKYGLKRHMESMHPETEMTHVCNTCGKVAPSAAALQRHISYMHKMERKYKCPMCDKAFKKTGGLKPDKNNDNARFICSTCWEALDSFHKFYQQVEEAHITLAKKTPVEDEGLKLESDQTAIQSEAEDVEKFDPISDFLNADVKLEVKEDADITLPPYDALPDVEEKINVNHIEKAKGTNSSDSSDSDDSDDSESEIPLANLAKARSRKRGKTKEATSSNDDVESLNEWQDHHSNNDDDDVDDDDDDDESDFEVKKSKPIRKKIITNTGKKRGRPCKNAPRRDTAPKQITEEQIKKRELSHEYDDIIEKNMKLVCNVCLIPLANFFILKKHYRAKHNERGYASCCGKKFLKRGILVDHIYTHLNPEHFKCDKCDKVLADRRCLEVHMNTHVMEKQRLYQCDQCCKSFFKKPLLTRHLHIHIPEEERKFPCEECNKFFPSNYTLRAHINNVHQNAYAKICDQCGKSIRGREAFQRHLLEHAGVPIPSVQCDKCGAKLKNKYGLKRHMNSMHTESNVPHVCNLCGKVAPNSAALQRHYSYVHKCERNHKCPMCDKAFKKAGGLKEHMTTHTGEVLYTCPHCPKTFNSNANMHSHRKKMHRKEWEENRRHPHMGSSANAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -