Cran017491.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638385.1:10665550-10668553[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.024 2.4 9.1 0.6 1 23 114 137 114 137 0.95 2 13 0.00027 0.027 15.2 1.3 3 23 144 165 143 165 0.96 3 13 1.3e-06 0.00013 22.5 3.6 2 23 175 197 175 197 0.97 4 13 1.8e-07 1.8e-05 25.2 4.5 1 23 329 351 329 351 0.98 5 13 1.4e-06 0.00014 22.4 1.9 1 23 357 379 357 379 0.97 6 13 0.00012 0.012 16.4 1.5 1 23 385 408 385 408 0.93 7 13 3.1e-07 3.1e-05 24.5 4.0 2 23 418 439 418 439 0.97 8 13 0.0002 0.02 15.6 1.3 2 23 445 466 444 466 0.97 9 13 1.9e-06 0.00019 22.0 0.9 1 23 472 494 472 494 0.96 10 13 6e-07 6e-05 23.6 0.6 1 23 500 522 500 522 0.98 11 13 1.6e-06 0.00016 22.2 0.9 3 23 530 550 528 550 0.96 12 13 6.2e-07 6.1e-05 23.5 4.3 1 23 556 578 556 578 0.99 13 13 3e-06 0.0003 21.4 1.3 1 23 583 606 583 606 0.98
Sequence Information
- Coding Sequence
- ATGGTCGATTTCGATATCGACAAAATATGCAGAGTTTGTCTGCAAACCGATATCGAATTATCGCTTCTATTCGACGAACAAAATGCTGTCGATGGAATTTGTCTTTCCGACATGATATCTGAATGCACCATGTACAAGGTCCGCCGGCATGATGACTTTCCCCACCTGATATGCTATGAGTGCATGGATAGAGTGCGAAGTGCTTATTGCTTTAAGAAGCAGTTCGAAGCATCACATCGTACTCTCATCGCATTCCTGGAAACATTCAACAAAGTAATAGTGGATACAAAGCCTAGTGTCGCTAACGATAAGTGTATACAAACTGAAGAATCAACACTGTACCCCTGTGAGAAATGTGATGAGAAATTTCTAAACTATGAACGCTTGAGAGAGCATAGATCGGTGTCTCATAGGGGAACGGCAAATCTGTGTCGAATATGCTCGAAAACTTTTAATCGCATTGGGGATTTAAAAAATCATATTGCAGTATGTCATCCAGAATTTGGTCATATAACACCCAACGAATGTACGATATGTAGTAAGAAATTCACACGGAAGGATCATGTGAACCGTCACATGCGAAGCGTTCACAAACTGAGTCCTGACTTGGAAGAAGAAGACACAAGTGAAATgaaatcgaatgcaaatgaaaatgagacACTCGTGGAAGCTGAAATCGACTATGGAAATTTTACTAAGCAAGAGGCTGATGTAGAATTACTTTTGAACTTTGATCCGGATGACTGTGAAGACAATGCCAGCAGTAATGCAGAGCTAGATGCAACAAATCCATTTACCAGCGATGAAGACGAAAAGCCATTATCTAATCTGCGGAGTGAAATTTCAAAGAACATTGAAGTTAAACTCGAACCAAACGATAACTCCAATCAAAATGTATCGATTGGCTTGAAATCGGTTGAACCGAATGCCGTTAAGAAGGAAATAATGCCTTCACAGTATTTCCAAGAGCTTACCAATCGCCGATACAAATGCAGCGAATGTGATAAGTCTTTTACCAGAAGAAGTCATGTAAAACGACATCTTCTGTCCCACAGACAAGAGAAACCATTCCCATGTACCGTATGCGAGAAGAGATTCAGCAGAGCTGATCATTTGAAAATCCACTTAACCAAACATGATGAAGAGAAGCCGTTCCAATGTGATAGCTGTGATCGTTCTTATGGTCGTTCGGATCTTCTAAAACGTCACAAAGAACAGAAGCACAACGGCGATAAATCAGGCAGATCAGAAGTCTGTGAGCACTGTAACAAGTCGTTTAGTAGTAAAAACTATCTGCAAAAACATATGCGATTGCATACTGAGAAAACTTGGAAATGCAAGTGGTGTTCGTTTGAGTTTGAATCCAAAGAATCTTTAAAGAAACACGCCAAATCGCATAATAATGAGAAACCATTCCTGTGCTCGAAATGTGGTTTGCGTTTCGTACGAAATGATTATTTGTTGGTCCATATGAGAAGGCACAACGGTGAGAAACCATACAAATGTAAATACTGCGGTAAGGGCTTCCCGCGTGCTACCGATTTGAACGTTCACGAAAAGTATCATACGGGGGAGAAAACTCACTTGTGTACCACTTGTGGAAAGGGATTCCAGCGAGCCTACAATTTGGTTGTACACATGCGTGTGCATACCGGCGAGAGACCATATCAGTGTCCCCATTGCCCAAAGAATTTCACACAGTGCAATGATTTGAAGGCGCATGTACGGCGGCACACTGGAGAGCAGTATAAGTGCGAAATATGTGGAATTGGATTTATACGCTGCTACAACTTAACACAGCACAAATTAACTGTTCATGGAATTGAGGTCGAGTCACGAAAACGGCGACTTGCTAAGGTCCCATTGAACAATTTAACGCAAAACGTAAGTTTCCATTGA
- Protein Sequence
- MVDFDIDKICRVCLQTDIELSLLFDEQNAVDGICLSDMISECTMYKVRRHDDFPHLICYECMDRVRSAYCFKKQFEASHRTLIAFLETFNKVIVDTKPSVANDKCIQTEESTLYPCEKCDEKFLNYERLREHRSVSHRGTANLCRICSKTFNRIGDLKNHIAVCHPEFGHITPNECTICSKKFTRKDHVNRHMRSVHKLSPDLEEEDTSEMKSNANENETLVEAEIDYGNFTKQEADVELLLNFDPDDCEDNASSNAELDATNPFTSDEDEKPLSNLRSEISKNIEVKLEPNDNSNQNVSIGLKSVEPNAVKKEIMPSQYFQELTNRRYKCSECDKSFTRRSHVKRHLLSHRQEKPFPCTVCEKRFSRADHLKIHLTKHDEEKPFQCDSCDRSYGRSDLLKRHKEQKHNGDKSGRSEVCEHCNKSFSSKNYLQKHMRLHTEKTWKCKWCSFEFESKESLKKHAKSHNNEKPFLCSKCGLRFVRNDYLLVHMRRHNGEKPYKCKYCGKGFPRATDLNVHEKYHTGEKTHLCTTCGKGFQRAYNLVVHMRVHTGERPYQCPHCPKNFTQCNDLKAHVRRHTGEQYKCEICGIGFIRCYNLTQHKLTVHGIEVESRKRRLAKVPLNNLTQNVSFH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -