Basic Information

Insect: Criorhina ranunculi
Gene Symbol: -
Assembly: GCA_951813785.1
Location: OX638381.1:84308807-84320716[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.1e-07 7e-05 23.4 0.5 1 23 234 256 234 256 0.97

2 18 0.071 7 7.6 3.9 1 19 264 282 264 287 0.90

3 18 3.4e-05 0.0034 18.1 0.8 3 23 308 328 307 328 0.98

4 18 3.9e-06 0.00038 21.0 0.4 1 23 334 356 334 356 0.98

5 18 6e-08 6e-06 26.7 0.1 2 23 363 384 362 384 0.97

6 18 1.8e-05 0.0017 19.0 2.8 3 23 392 412 390 412 0.96

7 18 0.0001 0.01 16.6 4.6 1 23 418 440 418 440 0.99

8 18 0.0015 0.15 12.9 1.0 1 19 446 464 446 465 0.98

9 18 0.19 19 6.3 0.1 2 21 703 722 702 725 0.88

10 18 1.8e-05 0.0018 18.9 0.2 2 23 735 757 734 757 0.95

11 18 0.07 7 7.6 0.8 3 23 765 786 764 786 0.94

12 18 1.5 1.5e+02 3.5 2.1 3 20 797 814 796 817 0.91

13 18 0.00043 0.043 14.6 4.2 1 23 826 848 826 848 0.98

14 18 6.7e-05 0.0067 17.1 0.2 1 23 854 876 854 876 0.98

15 18 7.8e-05 0.0078 16.9 2.1 1 23 882 904 882 904 0.98

16 18 1.4e-07 1.4e-05 25.5 1.0 1 23 910 932 910 932 0.98

17 18 6e-05 0.006 17.3 3.0 1 23 938 960 938 960 0.97

18 18 0.0025 0.25 12.2 5.2 1 23 966 989 966 989 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.1e-07	7e-05	23.4	0.5	1	23	234	256	234	256	0.97
2	18	0.071	7	7.6	3.9	1	19	264	282	264	287	0.90
3	18	3.4e-05	0.0034	18.1	0.8	3	23	308	328	307	328	0.98
4	18	3.9e-06	0.00038	21.0	0.4	1	23	334	356	334	356	0.98
5	18	6e-08	6e-06	26.7	0.1	2	23	363	384	362	384	0.97
6	18	1.8e-05	0.0017	19.0	2.8	3	23	392	412	390	412	0.96
7	18	0.0001	0.01	16.6	4.6	1	23	418	440	418	440	0.99
8	18	0.0015	0.15	12.9	1.0	1	19	446	464	446	465	0.98
9	18	0.19	19	6.3	0.1	2	21	703	722	702	725	0.88
10	18	1.8e-05	0.0018	18.9	0.2	2	23	735	757	734	757	0.95
11	18	0.07	7	7.6	0.8	3	23	765	786	764	786	0.94
12	18	1.5	1.5e+02	3.5	2.1	3	20	797	814	796	817	0.91
13	18	0.00043	0.043	14.6	4.2	1	23	826	848	826	848	0.98
14	18	6.7e-05	0.0067	17.1	0.2	1	23	854	876	854	876	0.98
15	18	7.8e-05	0.0078	16.9	2.1	1	23	882	904	882	904	0.98
16	18	1.4e-07	1.4e-05	25.5	1.0	1	23	910	932	910	932	0.98
17	18	6e-05	0.006	17.3	3.0	1	23	938	960	938	960	0.97
18	18	0.0025	0.25	12.2	5.2	1	23	966	989	966	989	0.95

Sequence Information

Coding Sequence: ATGGACAGTAAAACAATTACAGATCTCACATGTCGTGTGTGTTTAAATGTTGAGGAACTCATGGTCAATATCTACGAGGAAGTTGAAGATTTCCAATCGAATCTAGTTGAGTTACTCGAAGCTTGTGGCGGACTCATGGTTGATCGTTCAGACAATCTTCCAAAATACCTTTGTAAAGTATGTGCCGGAGAACTTCTAGTTGCGGCTAAGTTTCGAGAAAAATGTGCGAAATCCAATGAACTTCTCGGCCAATTGGTTCCCAAAGAAGAAGATGCAGAAAGTTCCCAATTGGTATATATCTCCCACACAGACACAATTGAAACCAATCTATTCAATACTTCAGAGGAGATTCTCAATGCAATCATAATTGAAGAGGTGGAAGAGAAAGTGCCAACGGATTTTGAATGGAATGAACATCCCACTATCGAGGGGGAAAGTAGAAATGTTATCATCAATGAAATCCAAAATCCGTCTTTCGAAAGCACTGATTTCATAGAAAGTGAAGCGCCAGAAAGCAATATCGAGAGCCAAGATATCCCTAACGACAGTGAAAATCAAGTCCAAGCAACGGATCCACAATCAGAGGATGACATTATTGTGTTTGACCACGGCGACGAAGGCTATATTGTGGAGACAATAACCAAACAGAAACAAAAGgcaaatacgaggaaaagaaTGCAAGAAGCAGCACCTTTGAAATTCGATTGTGATGAATGCGGTGCTGCATTTAGCAACCATGATAACCTCAGTCGCCACTTGCGTATTCATCCAGAGTTTGCAGGAAAATTGCACATTTGCCCTATTTGCTTTCATTCCTTCACTAAGGAGGAATCCCTACAAGAACACTGTACATCCATTCATTCAGACAACGAATCTCAACCAGAAATCCgtccaaagaaaaagaaaactcgtAACGAAATCTGTGACACTTGTGGCAAAATCTGCAATTCAGAGGCTAGTCTAAAAGTTCATATCCGCACACACACTGGAGATCGACCGTATCCATGTACGGAATGTTCCAAGGCTTTCAAGACGCAAGCGGCGTTGtcacttcatctgaaaagGCACGCAGGTCAATATGACTGGGAATGCGAGGTGTGCGGTAAGCCTTTTGTTGAGTCAAGCAATCTCAGAGTACATATGCGAACTCATACTGGAGAAAAGCCGCACTTGTGCAAAGTGTGCGGCAAGAAGTTCTCACGAGTGTTTCTGTTGCAATTACATTTGCGAACGCACACTGGAGAGAAGCCGTACAAATGTGAAACATGCCACAAGGCCTACAGTCAGAAGTGCGACTTGGACATTCACGTGAGAACCCACACTGGTGTTAGGCCATATGTGTGCCCCATCTGTTTTAGAGGCTTTGTTAAAAGTTACGCACTGCAGAAACACTGCTGCCATCTAACAATTGTTCTGAAAGATGGTCTACCAAAGGGTGTGTGTCCAGAATGTGTACGCAGCTTGAATATGTCTTTTGAATTCTACGAGAGGGTACACGAATCGCAACAGTCGTTGGGGAAACTTTTTAAAGTTGATGCTTCATCGAAAATAACGGAAATTGAAGTGGATGATGGAGCTTCTGAGGACCAAAAGACTCTTAATAACTTGATGGTATCTACAGCTGCCACAGAAATTGTTAAAACTGTTGAAGACCCATCAAAGAATGAGACCCACGAGACGACAATAGAGGCGACTGATAATGACGTCAGTGATGATGTTGCCCGTGTGATGGAGGAAATACTTGGCGTGAAAAATGAGCAAATAGCGTACTTGATTCTAGATTCAGACACCGAGGAAGATGCATTAAAGCCGGAAGAAAGTCCAGAAGATGAGGACGATGAGATGAATACTCAAACGGTTCTCGTATCGGGACAGGGAACCTATGCTGGTATAGAGTTcatcgaagaagaagaggaaatcgATTTTGAAAACAATCATTATGAAATCATTgaggaagtagaagaagaagaggaaacacaGATCGAAGAGCAAGCACAGTATGAGCTACAAGTCACGGAAGATAAAGATAAGGACAATGCGAACCCTTCCACATCTGTGTCTGCCACTGCGGTTGACACGAACGAGACGTGGTTTGACTATGAGTGGAAATGTGCACGTTGTTTGGAACCGTTTCCTACTGCCAAACACCTGATAGAGCACAACGAAGAGGCGCATCTTAATCGCAACTCCGACTTGGAATGGGTATGTGCAGATTGTCAAAAGGTATTTCCGCGTTACTATACGTTGATTAATCACATCCGTCAGCGGCATCGTACAAAACTGGCTTTACTTTGTGACATTTGCAATGAAAGTTGTACTTCTTTCAAAGACTTGGGCGAACACCGTCAGGCAGTGCACAAAGTTGATGATAATCTCATCATGTTGCTATGCGAGACGTGTGGAAAAGGCTTTCTTACAACGAATTCCCTGCAGATACACAGCAAGTGTCATCTGCCTGATAATCTACGCTTGCGCTACTCATGCAATTTATGCGATAAAAAGTTTCGAACAACATCCAACATGAAATTTCATCAGAAGATGCATTCAGGAACTCGAGACTATGTGTGCGATCAGTGTGGAAAGAAGTTCCTTCAAAGGGCGAATTTAGAGGAACACTTGGTGACACATCTCACTTTTACACCGTACGAGTGCTCGCTCTGTAACAAATTATTTAAGACACCAGAACGACTTACCAGACATAAACAACGTCATAGCGATGATAAACCATTTAGCTGCAAGGAATGTGATAAAACTTTTCGTACAAAGGATGCAATGGCAACGCACATGAGGATACATACTGGAGAAATGCCATTCGCGTGCGAATACTGTCAGAAACCATTCCGGTTTAGGAGTACCTTAATGACGCATCACAACGTCCATACCGGCACCAGACCTTATTCCTGTATCGAGTGCAATCATCACTTCACCAATTGGCCAAACTACAACAAACACATGAAACGTCGTCACGGAATTGATAGGTCGAGTAAAAATCCACGCGGTAAAAAACCCAGCAATCCAGCGAAACCTTTACAAAAAGTAAATAGTCCTCCGACCAATAGAAGAAAATTAAGGTCCATCGTCAAGCGTGAAACGGAAGAGTATGTCTACAATGTTGAACAAGAAGAAGACGATGTTGTTACTGAATACGAACCGGAAGAGAGTATTACCATCATAGAACCCAAGCAGGAAACGGAAACGTCAGGCGACAATTATGAAGACGCCATTTGA
Protein Sequence: MDSKTITDLTCRVCLNVEELMVNIYEEVEDFQSNLVELLEACGGLMVDRSDNLPKYLCKVCAGELLVAAKFREKCAKSNELLGQLVPKEEDAESSQLVYISHTDTIETNLFNTSEEILNAIIIEEVEEKVPTDFEWNEHPTIEGESRNVIINEIQNPSFESTDFIESEAPESNIESQDIPNDSENQVQATDPQSEDDIIVFDHGDEGYIVETITKQKQKANTRKRMQEAAPLKFDCDECGAAFSNHDNLSRHLRIHPEFAGKLHICPICFHSFTKEESLQEHCTSIHSDNESQPEIRPKKKKTRNEICDTCGKICNSEASLKVHIRTHTGDRPYPCTECSKAFKTQAALSLHLKRHAGQYDWECEVCGKPFVESSNLRVHMRTHTGEKPHLCKVCGKKFSRVFLLQLHLRTHTGEKPYKCETCHKAYSQKCDLDIHVRTHTGVRPYVCPICFRGFVKSYALQKHCCHLTIVLKDGLPKGVCPECVRSLNMSFEFYERVHESQQSLGKLFKVDASSKITEIEVDDGASEDQKTLNNLMVSTAATEIVKTVEDPSKNETHETTIEATDNDVSDDVARVMEEILGVKNEQIAYLILDSDTEEDALKPEESPEDEDDEMNTQTVLVSGQGTYAGIEFIEEEEEIDFENNHYEIIEEVEEEEETQIEEQAQYELQVTEDKDKDNANPSTSVSATAVDTNETWFDYEWKCARCLEPFPTAKHLIEHNEEAHLNRNSDLEWVCADCQKVFPRYYTLINHIRQRHRTKLALLCDICNESCTSFKDLGEHRQAVHKVDDNLIMLLCETCGKGFLTTNSLQIHSKCHLPDNLRLRYSCNLCDKKFRTTSNMKFHQKMHSGTRDYVCDQCGKKFLQRANLEEHLVTHLTFTPYECSLCNKLFKTPERLTRHKQRHSDDKPFSCKECDKTFRTKDAMATHMRIHTGEMPFACEYCQKPFRFRSTLMTHHNVHTGTRPYSCIECNHHFTNWPNYNKHMKRRHGIDRSSKNPRGKKPSNPAKPLQKVNSPPTNRRKLRSIVKRETEEYVYNVEQEEDDVVTEYEPEESITIIEPKQETETSGDNYEDAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -