Cran004829.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638381.1:78569086-78583500[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 2e-05 0.002 18.8 1.9 2 23 147 168 146 168 0.98 2 28 0.01 0.99 10.3 0.7 2 23 186 208 185 208 0.95 3 28 0.04 3.9 8.4 2.1 1 20 791 810 791 813 0.91 4 28 1e-05 0.001 19.7 1.3 1 23 820 842 820 842 0.97 5 28 0.02 2 9.3 0.9 1 23 962 985 962 985 0.94 6 28 0.056 5.6 7.9 0.9 1 21 1022 1042 1022 1043 0.94 7 28 0.00013 0.013 16.3 0.5 3 23 1055 1075 1053 1075 0.96 8 28 6.7e-06 0.00067 20.3 0.5 1 23 1082 1104 1082 1104 0.98 9 28 0.0038 0.38 11.6 0.5 2 23 1118 1139 1117 1139 0.97 10 28 0.063 6.3 7.8 0.2 1 23 1214 1237 1214 1237 0.94 11 28 0.00089 0.089 13.6 2.3 2 23 1303 1324 1302 1324 0.98 12 28 6.1e-07 6e-05 23.6 2.1 1 23 1331 1353 1331 1353 0.98 13 28 5.3 5.3e+02 1.7 0.7 2 23 1384 1405 1383 1405 0.87 14 28 0.00042 0.042 14.6 2.6 1 23 1490 1513 1490 1513 0.96 15 28 0.029 2.9 8.8 2.2 1 23 1550 1573 1550 1573 0.95 16 28 0.061 6.1 7.8 4.0 1 23 1583 1605 1583 1605 0.98 17 28 1.3e-05 0.0013 19.4 1.0 1 23 1611 1633 1611 1633 0.98 18 28 0.00055 0.055 14.3 0.3 3 23 1658 1679 1657 1679 0.97 19 28 0.00027 0.027 15.2 1.9 1 23 1720 1743 1720 1743 0.95 20 28 0.056 5.5 8.0 3.1 1 22 1750 1771 1750 1771 0.97 21 28 1.2 1.2e+02 3.7 1.1 1 23 1780 1803 1780 1803 0.91 22 28 0.0054 0.54 11.1 2.1 1 19 1809 1827 1809 1828 0.97 23 28 6.9e-05 0.0069 17.1 1.9 1 23 1839 1861 1839 1861 0.98 24 28 1.7e-05 0.0017 19.0 0.2 1 23 1880 1902 1880 1902 0.96 25 28 0.00068 0.068 14.0 4.3 1 23 1908 1930 1908 1930 0.99 26 28 9.3e-07 9.2e-05 23.0 3.4 1 23 1936 1958 1936 1958 0.98 27 28 2.3e-07 2.3e-05 24.9 2.4 1 23 1964 1986 1964 1986 0.99 28 28 0.00028 0.028 15.2 0.4 1 23 1992 2016 1992 2016 0.93
Sequence Information
- Coding Sequence
- ATGCTGTATGAAAGTGCTGAGACTACTGATCATCGCACATTGGGTGATATCTTCTTCGATGTCGTGAAAATCGAAACAAAAACCGACATAGAATCCTCACCTAGTCGCATTTGCATTCCTTGTTCACAAGATCTAGTAAGCGCATACAATTTCATTAAGACATCACAGCAGAACGAAGATCGACTGCGTGATTACTTTAAAAGTTCTAGCATAATACAACCCGATTGCTTGTCCGAATTTCCCATAGACATTCCAAATCAACCAAATGTCGCTGACGCCCTGCAAATAAAGGTtgaaaatgaattaataaatGAGTATGTTGAACCTCCACCTGAGGACAATAATCCTCCACCAAGTAGTTCCGAATCAGCCGAATCAGAAGGAAATGACTACGAAGATGAAGCACCATTGCACAAGGAaagtaaaattaataaaatgcaGTGTACTTACTGCGGTCGTATATTTAAGAGACTGGACTTTTTGGAGaatcacaaaaggaaacacGAAGAAGAACTCAATAAGAAAGaAGAATCAGGTGAAGATACCTCCACGCTTATATGTGATGAATGTGGAATTAATTGCGATAGCAAACTTGAACTAAAGACCCATCGTTTGACCGAACACCCTCCTAACAGAACAATATCTTCTGAGCGTGAAAATAGTGAGAGTTCtgcaattcaaaacaaaacaattaacaaatgTGACCATGGGTGCTCTCGTCCACCAACTGTAGAACGATGGTACAAGAAGAAGATGTCTGTACACCGTGGTTCAGAGCAAACCGTTTCAAAAGATACCACAGATATTTTAATGTTAAAATTAGAAATGAGTAATTTAAGAGAAACATGTTTAAAAGAATTCAGTGAGATAAAAGCACTAATCAGGCAGCAAAGTAATACAATAACTAAGGAGAGAGATCATAAGGATGTGATAGAGAAAAGTGATGAAGTTGTAACACAAATGCCCGTGTGGAAGTTTGACAAAATATTCCCAATAAACTCAGAGGAAGAACTCAATGCACTGAATAGTATCGATGAGAATCAAAAATTGATTGCTACCAAGCGAATGGCTTCAAGTGAGTTGGATGATATACATAATAAGTCTGTGATAGTGACTGCACCAAAAGGAACTTCCAGTGAACTCTTCCCTTcatcgacaaaagaaaaagaatgtgCAGATATGACGGCTTCAATCGAATCCACTGCCGGTTCAACTAAAAAGTTTAGCCACTTAAAGGAATCTGAAGAGTCAGACGCAGAGGTAGAGGATCCTAATTTAAGTACAACAACCTCCAAACGTATAACGtataaaaaaattctattcgaACAAAAGGAATTGCTTGTGAAGCTTTACGAAGAGGGTAAAACCATCAAAGAAGCTGCGTTTATGTCCAACATAAACATTAATACTGCCAAAGGTATCCTGCGGAATTATAAGGAAAGTAGTGACGCCCTAATAGACAAACGTCGTGGCGGCAATAGAACACGCAAACTGACTTGTGATGTACTTTCCACTATCGAAACATGTGTGGAGAAAAATCATGCTGTTCATTTGGAGCACATAAGAAACATTTTAGCCGAACAGAAGATTCATATAACCAAGAGTACCATTAACAATGGTCTGCGGGAACTGAAAATTACACTTAAACAGCCCTCTTATGAGTCACAACAAGTAAACCAACCGCAAGCAATTGAACACCGAAGGATTTTTGCTCTTGAATTCGCCAACTGGGCGCTTGATGATCGacataaaatgatttttatagacGAATGTGGAGTTAACTTGCATGTGGGAAGGCGTCAGATGCAGTCAACTACTCCAATTGTTCTTGGTCGCAGTGCAGTCATGATAGCTGCGCTCAACAGTAACGGCATCATCCATACTAACATTTTTGGCAGTAACTCGTGCAATACTACAAAATTCGCCACGTTTCTACGTGAACTTGTTGATAAGCTGTCATTGAAAGATGACATGGGAGATGCCATTCTTATTATGGACAATGCAGGCATTCATGAAAGCCGGGAGGTGGGTGAAATTCTGGCAACCTCAAAGATCTGCGTTAGAACCTTGCCACCATTTTCTCCAATGCTCAATCCACTTGGAAAGTCATTTATAAAGATGAAAGCTTATGCGCGAAGCGTTTTGGGGGATGCTTCGATAGAGGAGACCAATTTAGTAGAAGTCTTGGAGAAAAGTGTGTCAAGCATTACAGCGACTGATTGTAGTAATTATGTCATGGATGTGATTTTGCTGCTGCATGATGCCATGGCTGGTAGACCtaaAAAACGGAAACGGCAACCGCGATGTCATCgtccaaaggaaaaaaaaagggaaactagaaaacaaaataaaaataaagcagcCGGCCGTTTTGAATGCGACACTTGTGGCAAAACGTTTGCTTGGAAAAAAGATTTGGGTCGCCACGAGAAATGCCATGAGCCCAACAACAAGAAGTATGCATGTCCACACTGTGAACGTCGATTTATTCGAAAAGACAAGCTCACATCGCATTTACTCGTTCACTTGGCGGGCGTTGCTAAATCACGTCCTTTACGGTCCATTCAGTATTACGCGCATAACTTGTTTTCTGGGAAAAAATTCCTAGAAATAAAGTGTATGCTCTGTAACTTTGATAAGGCATCAAACGTGCGGGAACTTCGTCGGCACATTAGCTTGCACAACAACTTGGAGGTTCTTGAAGAACTCGGTAATAGTAATGTCGTTAAGAGGTTCTATCCCGATAGGAGTTTGCAAGAAGTTATTCCATTGATTGCTGCTCAAATCGAAAATAATCGGTTCGAGAAACTACACTCGATAGTGAATGCGAATACCTATGAAATGGGTATAAGCGATTCGAACGAAAGTGATACTGACACTGAGTACATGTGTGAGGCATGCGTTGAGCCCTTTAATCGTAAACACAAACTAATGACCCATCAGGCCTACGAGCACACTTTCGACGAGTGCCCATACAAATGTGACAATTGTCAACTAAAATTCACTTGCAAACAAGTGTTCGAGAGCCATCTGAAACATCACTGCGAAAACCCCGACAAAGAATTCAAATGCAAGGAATGTCCGGGTCGGTTTACATGGCCAGAGAATCTTGAGAATCACAAATGTAGCAAGAAAGTACGAATTGATAAGGAGAAGACCATTTGTGAGGTTTGCGATAAGAGTTTTCCTACGCCCAAAGAAATGCGAATGCATAAAAAGTCCCATATACCGGACAATAAATCTTTCAATTGCTCCGTATGTGGCGAGAAATACATTCGTCTTGCGAATCTACGTCGCCATTTGAAGATGCACACTGAAAAGCATCTCAAATCCATGCAGCCGAAGAGATTACAGTGTTTGCTTTGCGATGCAGAGTTCCAAAGTCTGCGCAATTTAAAAACTCATATATTCACGCATTCAGACGGCCAGACAAACGTTAACTTTAAATGCTGTGAacaatttgtaaacaatttctATCCAGAAGCGGATGAAAACGACATTTCGGAGCACATTCAGCGTTGTTTCAGTGAGCAAAAACTTTGGCGCCTGTATATAGcggtaaataaatttaacctaGAGATGGTCTTGAGTGATTCCgacagtgatgatgatgaatttaaTCAATCACCAAAAGAAAGCTACATTTGCGAGTTGTGTGACTTAAAATTTGATCGTATGCAAGCCATATTACGACATCAGTACATTGAGCATGATTCGAAGAAGACGAGTTTTCCACACAAGTGCGATAGATGTAGCGATCAGTTCATTTGCCAAGCTCTCTTAAGTCGTCACCAGAAAAGTGAGTGCATAAACGTGGACAGAATTCACGCATGCGTAAAATGCGGCGTCAAATACACTTGGAAGCAAAATTTGGTCGGCCATAGCTGTCAAAAGGAAGACAGTAAGAAATGCGAGGTCTGCGGCAGGAAGTTTAATTGGCAAAAAGACCTATACCGGCATAAGCGTACCCACATACCAGATGATAAAAAATTCGAGTGTCTGGTGTGCGAAAAGAAGTTCAGTCGAAAGGATAACATGCGATCTCACATGAGAACACACGATACTGACAATAAGATGGGCTTGAAAGCGACGCTTACGTGGGAGCAACAGGACGAGAACTTGTGTAGGCCACATGGGGACAAATGCATTGAatgtaaaatttgtttggcgAAGCATGATACAATTCGGGAGCTAGCAAGTCATTTAAGGACACACAAAGACAGCCGAACTCTTAGGAATCAAGAAGCTCAGGCCAAGGACATCTCGATGTTGTTGTACGGTAAGGAAATGGAACTGGATGATCTTAGTGAGGCAATAAAACAAGATCTCCTGGATGACAAAAACGCACATTTCTATTCGATCACAAACGAAATGGGCTACGAGTTGACTCTGATCGATTCTGAAACAGGTTCTGAATTAGAAGTAGACGACAAtacagatgatgatgacgatgaactGCGAAAAGGTTACAACTGCAGCCTATGCAATAAGACTTTTAATCGGAAGTTTAAAATGTTCGAACATCAAAGGGCGGGACATTCGTGGGACGAGCTGCCATTCGAATGTGAACATTGTTCGGCGAAGTTTGTCTGTGAGAGTATCTATGATATGCATCTGCAGCACCAATGCGAAAACAAagggaaaaaatttaaatgcaagAGATGTCCATTAAAATTCACTTGGAGGGATAACCTTAAATATCACGAGAAATATATACATGATAAGCAGCCAATATTGCCGAAGAAATACCATTGCCGTGTTTGTGAAAAGAGTTTCCAAGCGCGCAAGGATTATCTAAGACATAAAAAGATTCATGAACCCGATGAGGAATTCGAATGTACGTGGTGTTTCAGAATATTCATGCGAAGGGATAATCTTAAGGTTCATATGAAAGTTCATCAGAATGCCACTCATCTCTTGCTACCCGACATCTACTACCTAGCCCGCCCAAATGGAGccaaaattgcggattgtaagcTTTGTGATCAGAAGTTTACCAAAGTCTCCGCATTGCTCGAACACATTCGAAGTGCGCATTCAAAACATCAGAAGCAAGCTACCACTCCCAATCCAACAAGTTACTCGATTACAAACGCTTTAGGCTATGAGATGGATATTGAGGACTCTGAAACTGAGAAAGAGGACACAATAGAGAAATATTCTTGTGATGTTTGCAATACACGATTCAATCGTCGCTTTAAACTGCTAAAGCATCAACAAGCACTTCACTATTCCGACAACATTCCACACAAGTGCAACTATTGCAACTTCAAATGTGTATCGGAAGCAGTGCTAAATTATCACATGCGAACACAATGTATGAATGAGACGAAACAATACCACTGCAGTAGATGTACAATGCGATTCATGTGGCAGGAGAATTTAGAAAACCATGAAAGCTTAATACACGACAGCCCGCGAACACACACATGCGACGTGTGCAAAAGGGATTTCGCCACACAGCACGACCTGAAGAGTCACAGTGATTGCAAACCGCCGACCGAGGTTAAATTTTACGAATGCAAACTGTGTGATCGAAAGTACAATCGAAAGGATCGCTTGATGAAACACGTTAAGGTTCACGATGTCGAGTCCAAAAAATCGCTTGCCAAAACGAAACAATCCTCAGATAAAAAGTATTTGTGCGCATTTTGTGGTAAGGAAGTGTCGAGCTCTTCGAATCTAGTGATACACATGCGGCGACATACAGGTGAGAAGCCCTTCAAATGTGAATTTTGTAACAAAGGCTTTCCACGATCATCAGATTTAAGTTGTCACCGGCGGACTCATACTGGAGAACGGCCACACAAGTGTACAGTTTGTGAGAAGGCATTTTCGCGTTCGTACAAACTGCAAACTCACATGCGGATTCATTCGGGAGAAAAGCCGTACAAGTGTACATACTGTGACAAGAGTTTCACTCAGTCCAATGATTTGACGCTTCATGTCCGCAGGCACACCGGTGAAAGACCATATACATGTGAGACATGTGGTGAGAGGTTTATACAGGGAACAGCACTTAGAAATCACAGAAGGATGCGCGGCCACTATCAGATATAA
- Protein Sequence
- MLYESAETTDHRTLGDIFFDVVKIETKTDIESSPSRICIPCSQDLVSAYNFIKTSQQNEDRLRDYFKSSSIIQPDCLSEFPIDIPNQPNVADALQIKVENELINEYVEPPPEDNNPPPSSSESAESEGNDYEDEAPLHKESKINKMQCTYCGRIFKRLDFLENHKRKHEEELNKKEESGEDTSTLICDECGINCDSKLELKTHRLTEHPPNRTISSERENSESSAIQNKTINKCDHGCSRPPTVERWYKKKMSVHRGSEQTVSKDTTDILMLKLEMSNLRETCLKEFSEIKALIRQQSNTITKERDHKDVIEKSDEVVTQMPVWKFDKIFPINSEEELNALNSIDENQKLIATKRMASSELDDIHNKSVIVTAPKGTSSELFPSSTKEKECADMTASIESTAGSTKKFSHLKESEESDAEVEDPNLSTTTSKRITYKKILFEQKELLVKLYEEGKTIKEAAFMSNININTAKGILRNYKESSDALIDKRRGGNRTRKLTCDVLSTIETCVEKNHAVHLEHIRNILAEQKIHITKSTINNGLRELKITLKQPSYESQQVNQPQAIEHRRIFALEFANWALDDRHKMIFIDECGVNLHVGRRQMQSTTPIVLGRSAVMIAALNSNGIIHTNIFGSNSCNTTKFATFLRELVDKLSLKDDMGDAILIMDNAGIHESREVGEILATSKICVRTLPPFSPMLNPLGKSFIKMKAYARSVLGDASIEETNLVEVLEKSVSSITATDCSNYVMDVILLLHDAMAGRPKKRKRQPRCHRPKEKKRETRKQNKNKAAGRFECDTCGKTFAWKKDLGRHEKCHEPNNKKYACPHCERRFIRKDKLTSHLLVHLAGVAKSRPLRSIQYYAHNLFSGKKFLEIKCMLCNFDKASNVRELRRHISLHNNLEVLEELGNSNVVKRFYPDRSLQEVIPLIAAQIENNRFEKLHSIVNANTYEMGISDSNESDTDTEYMCEACVEPFNRKHKLMTHQAYEHTFDECPYKCDNCQLKFTCKQVFESHLKHHCENPDKEFKCKECPGRFTWPENLENHKCSKKVRIDKEKTICEVCDKSFPTPKEMRMHKKSHIPDNKSFNCSVCGEKYIRLANLRRHLKMHTEKHLKSMQPKRLQCLLCDAEFQSLRNLKTHIFTHSDGQTNVNFKCCEQFVNNFYPEADENDISEHIQRCFSEQKLWRLYIAVNKFNLEMVLSDSDSDDDEFNQSPKESYICELCDLKFDRMQAILRHQYIEHDSKKTSFPHKCDRCSDQFICQALLSRHQKSECINVDRIHACVKCGVKYTWKQNLVGHSCQKEDSKKCEVCGRKFNWQKDLYRHKRTHIPDDKKFECLVCEKKFSRKDNMRSHMRTHDTDNKMGLKATLTWEQQDENLCRPHGDKCIECKICLAKHDTIRELASHLRTHKDSRTLRNQEAQAKDISMLLYGKEMELDDLSEAIKQDLLDDKNAHFYSITNEMGYELTLIDSETGSELEVDDNTDDDDDELRKGYNCSLCNKTFNRKFKMFEHQRAGHSWDELPFECEHCSAKFVCESIYDMHLQHQCENKGKKFKCKRCPLKFTWRDNLKYHEKYIHDKQPILPKKYHCRVCEKSFQARKDYLRHKKIHEPDEEFECTWCFRIFMRRDNLKVHMKVHQNATHLLLPDIYYLARPNGAKIADCKLCDQKFTKVSALLEHIRSAHSKHQKQATTPNPTSYSITNALGYEMDIEDSETEKEDTIEKYSCDVCNTRFNRRFKLLKHQQALHYSDNIPHKCNYCNFKCVSEAVLNYHMRTQCMNETKQYHCSRCTMRFMWQENLENHESLIHDSPRTHTCDVCKRDFATQHDLKSHSDCKPPTEVKFYECKLCDRKYNRKDRLMKHVKVHDVESKKSLAKTKQSSDKKYLCAFCGKEVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPHKCTVCEKAFSRSYKLQTHMRIHSGEKPYKCTYCDKSFTQSNDLTLHVRRHTGERPYTCETCGERFIQGTALRNHRRMRGHYQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -