Cran006994.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638382.1:25995716-25998835[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9 2e+03 -1.1 0.0 1 13 171 183 171 188 0.86 2 2 1.7e-07 0.00018 21.4 0.0 2 38 266 302 265 305 0.89
Sequence Information
- Coding Sequence
- ATGGAACCTGTCAAGAACATCAACTTCAGAGAGCCCCACTTTTTCATTCCCCATCACTGTGTCTTGAAGCCTGAAAGTTCGACAACCAACCTGAGAGTTGTCTTCGATGCTAGCTCGAAGAGTGATAGCGGGATTAGTCTGAATGAGATAATGCATGTCGGCCCAGTAGTGCAGCCTGACTTGTTTTCGTTGGCAATTGAATTCCGATCTCACAAGTATGTATTCACAGCTGATATTAAGCAGATGTACCGCCAAATTCTTCTCTGTGAAGATGATCGGCGATTCCATTACATACTGTGGAGAGGTTATCCAAGAGAAGAGATTAAAGCATATCGTCTCTGCACCGTAACGTACGGAACTACACCAGCATCTTATCTCGTTCAACTATCCGATGAAGAAAACGATAATTTTCCTACAGATGCAGCAGACGGAACTGTACGTGGACGATGTGCTCACCGGCGCCGATACAATAGAAGGAGCCCTCTCGTCGAAAGGATAACAGGGGAAATAACCGAGGCAGAACTCGACAAAGCGCTTCATCGCATAATTATTTTGATACAAGGTACCTTTTATCGTAAAGAAATTGCCTTGCTGAAAGAAAAGAAGCAGGTTTATGCTAGATCGCATGTTAGCTCGCTAAACCCATTCCTGGATGAAGAAGGAATACTTCGTGTTGGGGGCCGCATCGGAAAAACAGTATTGAAATTCGAGTCAAAGCATCCTGCGCTCTTGCCAAATAGCAATATGCCTCCTAATGAACCAAATAAACCACGTAGGCGGTACAAGCGTGTTTCGGAAGACGTCATACGCGAAGCTATTGCaaaaattgaacgaaaaaatgtgtctattACAAAAGCTTCGAGTCAATTTAATATAGCAAAGGGAACATTGATAAACAGACTTAAAAATTTGCATCGTATAAATGTCGGTTCTCCAACTGCTTTTAGCCCAACAGAGGAGAAAAGCTTGGTTGAAGCTCTGCTTATTGTAAGCGAGTGGGGATTTCCATTTACAGGAGCTAATAAAAAACGAACGAAAGTTAACGTGGAACCAGGAAAGGGCATAACAATGGTCGACTTTGGTGGATCCTCTCCAGGAAGCGAGACACAAGTAATGCTTCAAGTTCAAATTGAACCCGAAGGTTCTTCAGGTTGTATTGAAGAAATTTATCAGCAGATGTTATTAGAAAAGGATGTCGAAATTGATAACGACTGTCTTTCGCAGAACTCTGATCGATCTattgaagacatttttcaattagttttgcaatcaaagtaa
- Protein Sequence
- MEPVKNINFREPHFFIPHHCVLKPESSTTNLRVVFDASSKSDSGISLNEIMHVGPVVQPDLFSLAIEFRSHKYVFTADIKQMYRQILLCEDDRRFHYILWRGYPREEIKAYRLCTVTYGTTPASYLVQLSDEENDNFPTDAADGTVRGRCAHRRRYNRRSPLVERITGEITEAELDKALHRIIILIQGTFYRKEIALLKEKKQVYARSHVSSLNPFLDEEGILRVGGRIGKTVLKFESKHPALLPNSNMPPNEPNKPRRRYKRVSEDVIREAIAKIERKNVSITKASSQFNIAKGTLINRLKNLHRINVGSPTAFSPTEEKSLVEALLIVSEWGFPFTGANKKRTKVNVEPGKGITMVDFGGSSPGSETQVMLQVQIEPEGSSGCIEEIYQQMLLEKDVEIDNDCLSQNSDRSIEDIFQLVLQSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -