Cran020084.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- -
- Assembly
- GCA_951813785.1
- Location
- OX638386.1:5879486-5883783[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-08 2.3e-05 24.3 0.0 6 40 107 141 104 144 0.92
Sequence Information
- Coding Sequence
- ATGGATAAGGAATCGCAACGCCTCTATGAGCAATCTCTAAGGGAACCTCGTGAGATTCAACAGCGTTCATTGGACGAACCGGTGCGAAAGTATAGGAATTTGCAGACGCGAGTTCAGAATTATTTGGATGTCGATTTTTCTGATGTTGGCATGAATGAATGTTTAGATTATAATGTCAAGATGCGTGGATCGGATTACATTGGTAATGAGAACGTTGTCGGCATATTAAAGTATATGTTGAACttaATTTCTATTGCTATTATGCCGCGGAACTACATATTAAAGAAGCCGCCGCCATTATATTCAGTAGATGTTGTTGCAAAAGCGGTCCTCGacgtacaaaacaaaaatatgacgTTCAGAGCAGCTCAAGATGCATATGGGGTGCCAATATCTGTCATTTATAACAGAATCAAAGGGAGAAAAAACTCAATAGACAAATTTAAACAAGGACGTAAGATTGCACTTTCATTGGAAGTTGAAAATGAGATTGTCAAATGCCTTCTTGAACGCTCTTCATGTGGTTATCCATGCGATAAAGAGGAACTTATAAATTTGATCACTGACTATGTCGTTACAAATAGCATTAAGACTCCGTTTACTTATTCAAAGCCTGGACAAGAATGGTACAGAAACTTTATGAACAGACACCCCGAATTATCGTTAAAGAAACCGGAGCTGCTACAAAAATGCAGGAAAGATGCCAGAAAGCCCCAAGTCATTTACGACTTTTATAATCAGTTGAAAAAAGTTGTAACCGAATATGGGTTTGACgaaaaatcaaactttataTTCAATGCCGATGAAAGCGGGTTTTGTAATGATCCAAACAAACTGAAGGCAATAGGAAAAAAGGGAGTTCCAATGAGTAGACTCACTGGAGGTTCGGGACGTCAGTCAACCACTGTTTTGGCATGCGTTTCTGCAGATGGCTATGCTCTGCCTCCTTTAATTATCTTTAAAGGCGCAGCGGTACAAGCTCGATGGACAAATGATGAAGCATATCCTGGAACTTTATATGGAGCTTCAAAGAACGGTTGGATGGAAGAGCCACAGTTCTACCATTGGTTCATAAATGGGTTTGTTCCCCATGTAGAACGTCTCAGAGAACAAAACAATGCTGTTGATAAAACTGCTTTATTACTGTATGATGGACACTCCGGGCATATCAGCGTGCGAATAGTGGAAGCTGCTATGAATAATAATGTTCAACTGCTTCGATTTCCCAGCCATTTGACAGACAAGTTACAGCCGTTAGATAAAGCGGTTTTTGGTCCAGTTAAGACGGCCTGGGAAAAAGTCCTTGTAAAACATGGAAAAGAAATGTTAGGCAAAGGGTTGTTTCAACTATCCAAGTCTAAATTTACAAAACTACTGGGACAAGTTTGGAAGAGTGCCttgatttccaaaaatattatttctggATTCGAGTCAACAGGGGTTTTTCCAGTTGATCCATCAAAATTCCCGAAAACAGATTTCAATAAATCAGAGctggaaaaatatgaaaacaaaaatgcttcTTATACGGAAACCGTTCAAACCGCTCAATCTCTGGAACACCAGGAGCAACATTTAACTTCATATgCTCAATCATCTCCAAATATGCAACAGAGCCCATTGTGGATTCTCAGAGACCCCATCGCTACAGAAGGGATAAATTTGTCGTCACCTTCATCAGTTGGATCACCATTTATCCATACCAATTCTGAAAATGTCTTAGTAGATAATCAAAATGCCTCTACACCTTCAACCTCCAAATCACATTTAGTAAATGAAATGGAGTCTCCATTGTCTCAAAATATTCGAACTAGCTACTATTTGCCAGATAATATATTGAGCTCACCCGATTATTCCCCGATACCTTCAACTTCCAAAGCTGCTTCATCAGTTGCCCCCATGGCCCATTTTTTCGCAGTTCCTTGTCAGCTTCAAACTCCGAAACGAAATGTAACTCCCCGTTTAAAGCAGTTTCAATATGGAGAAATTTTAACTACGGATGAAGTTCTTCAGCGTTTGAAAGAAGCGGAACAAAAAAAGATCGAAAAACTTCAGCCAAAGAAGAAAGttccaaaaggaaaaaagaaaaatattgcatcctcatcttcatcttctgaCGAAGAAACCGTTAACTACACACCAGCTGATGATGATCTTATAGATTTAGACTGGGGCGAAAACGAAAATGGGAATGGgcctaatgaagttgatatgATGGAACCGAAACAAGTTCAGAACTTTCAATTGGGAGAATTTGTTCTGGCTTCCTTTAAGGGCGGAAAGAGAAACTCGAGCTTTTTTAAGTATGTTTGCCGAGTAGAACAACTTGatgttgaagaaaaagaaataaaagttcaaggGTTATCTGCGGTAAACTCATCAAAAACTTTGTTTAAGATAGTTAAAAAATATGTGAGTTTCATAAAAGTATTTCAAGTAATTGCAATGCTTCCATTACCGAAGACGGGATTAGAGGACGACGGAACAACAGTTTATTCATTTGACGGATATGTCCCTGTCAAGGAAATACGATAA
- Protein Sequence
- MDKESQRLYEQSLREPREIQQRSLDEPVRKYRNLQTRVQNYLDVDFSDVGMNECLDYNVKMRGSDYIGNENVVGILKYMLNLISIAIMPRNYILKKPPPLYSVDVVAKAVLDVQNKNMTFRAAQDAYGVPISVIYNRIKGRKNSIDKFKQGRKIALSLEVENEIVKCLLERSSCGYPCDKEELINLITDYVVTNSIKTPFTYSKPGQEWYRNFMNRHPELSLKKPELLQKCRKDARKPQVIYDFYNQLKKVVTEYGFDEKSNFIFNADESGFCNDPNKLKAIGKKGVPMSRLTGGSGRQSTTVLACVSADGYALPPLIIFKGAAVQARWTNDEAYPGTLYGASKNGWMEEPQFYHWFINGFVPHVERLREQNNAVDKTALLLYDGHSGHISVRIVEAAMNNNVQLLRFPSHLTDKLQPLDKAVFGPVKTAWEKVLVKHGKEMLGKGLFQLSKSKFTKLLGQVWKSALISKNIISGFESTGVFPVDPSKFPKTDFNKSELEKYENKNASYTETVQTAQSLEHQEQHLTSYAQSSPNMQQSPLWILRDPIATEGINLSSPSSVGSPFIHTNSENVLVDNQNASTPSTSKSHLVNEMESPLSQNIRTSYYLPDNILSSPDYSPIPSTSKAASSVAPMAHFFAVPCQLQTPKRNVTPRLKQFQYGEILTTDEVLQRLKEAEQKKIEKLQPKKKVPKGKKKNIASSSSSSDEETVNYTPADDDLIDLDWGENENGNGPNEVDMMEPKQVQNFQLGEFVLASFKGGKRNSSFFKYVCRVEQLDVEEKEIKVQGLSAVNSSKTLFKIVKKYVSFIKVFQVIAMLPLPKTGLEDDGTTVYSFDGYVPVKEIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00389547; iTF_00389548; iTF_00314241; iTF_01520975; iTF_00315116; iTF_01253777; iTF_01520977; iTF_01520952;
- 90% Identity
- iTF_00389548;
- 80% Identity
- -