Cran008556.1
Basic Information
- Insect
- Criorhina ranunculi
- Gene Symbol
- br
- Assembly
- GCA_951813785.1
- Location
- OX638382.1:54121266-54123238[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.5e-14 1.6e-11 44.0 0.0 3 43 288 328 286 330 0.91 2 3 0.013 14 5.8 0.0 27 37 359 369 350 374 0.87 3 3 4.4e-17 4.7e-14 52.1 0.0 3 40 397 434 395 438 0.93
Sequence Information
- Coding Sequence
- ATGAACCACCTCAAGTGGATGGGCCATACGGCAACCATCCTCGATATTCAGAAAACCCTAAAGAATGACCCAGCTACATGTGACATTACTCTTGCCTGTCGGGGTAGATCTGTGAAAGCCCATCGCTTTGTTCTGTCTTCATGTAGTGACTTGCTGCGTGATCTTCTTAGTGATGTGCCCAAAGGCCAGGAGGCCACCATAATAGTACCCGATGTCAAAGGTAATCTGCTGGAATGTGTTTTAAGTTTCGTATACATGGGAGAGACAAGTTTGTCCTCAACGAACTTGACAGAATTTCTGGAGGCCATCAGTATACTTGGCATTAAAAGTGCTATTAGTTTTGAATGTGCGAACAGTAGTTCATTTGCTACTTGCAAGAGTGTAGCAGAAATGACCGAAATGGAAGAGGAACTAATGGAAGCCGAACCGGAGCAGGAAATTGTCGAAAAAGATGACGAAGAGgatCAAACAGTTGCGGAGAACAACAGCGTGCGTGAATTGGAATTCCTTGAAGTTTacaatgaacaagaaaaaataagctACACTATCGAGAACATTACCCCAACAAATCCAAATGAATACATTCTTACAGAAAGTTCTGGCACCTTCACCTtaacaccaaatgaaaaaaTCGAGAGCAATGAAGTCGGAGCACTTGTTGAGAAACCCGACGAAGATAGTCCCATGATGGAGCACTATGTAGGTGATCCTATTGGCGATAGTAGTCAGTGCTCGAGCGCCGATATGAAAGAGGTCAAAGGTATTAAGAAACTAAAAGATGAATTTAGTGAATTTCAAGCTCTCAGTCCGGTGGATACTAAGGGATTTCAAAACTTTAACGAAACCCAATCGGCCCGAGTAGAAGCTTTGGAAAATGCAGTTCTCGCTGTGGTCGATGAAGGTATGAGTCTACAAAAAGCCGCCATTAAGTACAACATTTCAAAAACTGTTCTCTGGCGACGAGTTAAAAAACATCCACTTTATATGAAGACGACACGTGAAAACCCTCTTATAACAGCAGCATGCGAACGCTTAAAAAATGGCGATTCTCTGAAAAGCATTAGCCAGGCGTTAGACATTCCCATGTCTACATTGCATCGGCACAAAGTAAGACTTGCACAGGAAGGTCGTCTCCCAGAATATGTGACTTTCAAGAAACGTGGTTCAATATCAAAAGAAATGCtaaaagaaaaactcacaaaagCAGTGCAAGCATGCCTAGGTAATGGAATGTCACAGAATCATGCCGcaaatgtatttgatgtgccaAAGAGCACATTATGGCGacatttacaaaagaaaatctatCGGGAAGATAATTCAAACGCTATAAGCATTAAGGAGGAAGTAGTTTTGCCCTAG
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKNDPATCDITLACRGRSVKAHRFVLSSCSDLLRDLLSDVPKGQEATIIVPDVKGNLLECVLSFVYMGETSLSSTNLTEFLEAISILGIKSAISFECANSSSFATCKSVAEMTEMEEELMEAEPEQEIVEKDDEEDQTVAENNSVRELEFLEVYNEQEKISYTIENITPTNPNEYILTESSGTFTLTPNEKIESNEVGALVEKPDEDSPMMEHYVGDPIGDSSQCSSADMKEVKGIKKLKDEFSEFQALSPVDTKGFQNFNETQSARVEALENAVLAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGSISKEMLKEKLTKAVQACLGNGMSQNHAANVFDVPKSTLWRHLQKKIYREDNSNAISIKEEVVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00389772;
- 80% Identity
- iTF_00389772;