Casp014756.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- stc
- Assembly
- GCA_958507055.1
- Location
- OY293827.1:12464683-12475787[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.9 5.2e+04 -4.1 1.6 15 19 325 329 324 329 0.81 2 13 5.2e-05 1.4 10.5 14.8 4 19 373 388 371 388 0.93 3 13 0.00033 8.8 8.0 8.5 1 18 424 441 424 442 0.91 4 13 1.9e-09 5e-05 24.8 14.0 1 19 482 500 482 500 0.98 5 13 1.2 3.3e+04 -3.4 0.2 6 10 530 534 529 535 0.86 6 13 8.5e-09 0.00023 22.6 14.7 1 18 540 561 540 562 0.87 7 13 1.1 2.8e+04 -3.2 2.5 5 10 590 595 590 595 0.95 8 13 0.0088 2.4e+02 3.4 10.6 1 11 601 611 601 623 0.80 9 13 4.3e-09 0.00012 23.6 9.9 1 18 628 645 628 646 0.98 10 13 0.5 1.3e+04 -2.2 0.7 5 10 674 679 674 679 0.92 11 13 0.00042 11 7.6 13.7 1 19 685 702 685 702 0.85 12 13 0.00044 12 7.6 17.3 1 19 738 757 728 757 0.90 13 13 0.013 3.4e+02 2.9 13.9 1 18 767 785 767 786 0.90
Sequence Information
- Coding Sequence
- ATGGAGTCACAAGGCACAGATCCATTGTCTCAACAAGTACATTTTCCTCAAGATAACTTTGAATCTGTGGGAAGATCAGTTCGGAATTCCAGTAACAGTGACTTTAATTTGTGTGAATCAAATGCCAGCTCCACTAGCAGCAATGGAAGAAATCAGTCAGGTGGTCGAGGTAATGGACAATATGGAAGCGGGCGTTTATATGTTAAACCCAACGGCAATCGTTTCAAACAAAATGCTAggagaaataataatagatacaaTACAGAAGAAAATTTAGAAACACCTAGCGCAAGTACAAGTTCTAATACAAAACACTATAGAAACGATAATAGATCAAATACCCACCGTTCCGAGTCTTCTCAACAGAATAGATATTACAGAGGATATTCGAAACACATGCACGGAAGAGATAATGGTTACAACAATTTGTATTTTGAACATTCGTCTCAGGCTTCAGGTTCTTCAGAGCAACCGAACTGGAAGGAAAATGGGATTACCAAAAGAAATCACAATTATGGCAATAATAGCTACACGGACTATAAAGGTGCTAGTCGGAATAACTATTCGAATAACAGATCCCATGATAATTTCTACCGAAATGGAATGAGCAAGGATGATGATTCTTCTTCAAGAAGAGGTGATGCAGATGAATTCAGCCATAGGGGTGATCGACATAATAATCGAAATAGGAAAGAATATCCTAGATCGGATGTCAATAAATCTAAATCTTGGCgcaataatgataaaaacaaGAAAGGTTTCATCTCAGCTCGTGATAAGAAATtggATAATGCTTCTCAGAGGGAGAGATTGATAGAAATGTTGAACCGTCGTCTATTGGAATGCCTTGTTTGTTGTGAGAAAATAAAAGAAGCCGATAGAGTGTGGTCTTGTACTCTCTGTTTCCATATAATGCATTTGCGTTGTCTGGCAGCTTGGGCAAAATCTTCTAAAATCGAAAACGGTTGGCGATGTCCAGCCTGTCAAAATGTGTATAATGAAGTGCCCACACAATATATGTGTTATTGTGGCCAAGTCAGTGATCCTAAAAATTCACCTGGATTGATACCACACAGTTGTGGGGGTATGTGTCTTCGGAAAGGAAAATCATGTGATCATAAATGTACACTCGAGTGTCATCCAGGCCCTTGTCCCGATTGTACTGTTATGGTGGAAAGGGAATGCGGATGCAGGGCAACGAAACAAACAGTAAAATGTAATAGTGATATGAGTATCCTTTGCGATTCGGTATGCAATAAGCTGTTAGATTGTCAAATACATAGATGTAATTTAAATTGCCACATAGGCAAGTGTAACATGTGTACAGAAAAAATAGCCCAAGAATGTTATTGCGGTAATAGCGGAAGAAAAGTACCATGTAATGCTGTGAATGTTAACAGAACGAATTATTCTTGTGGAGAAGTTTGTGGCAAGTTATTATCATGTGGTAATCATAATTGTACAGAATTATGTCATGATGGTCAATGTGGCACATGCAAAACTGATGTTACTATTATTAAGAGTTGTCCTTGCGGCAAATCTTCACTGGAAAATGAGAGGAGCTCTTGTTTGAGTCCCATACCTAGCTGTGATGAGATATGTGGAAAAATATTGAGATGTGGACCATCCGATAATCATCATACTTGTCAAGAGAAATGTCATGATGGTGATTGTCCTCCGTGCCTTCTCTTTACCATTGTCAAATGTCGATGTGGGAATAtggataagaaaatatcttgtgaaatatttgttacaaacaTTACTGTAACTTGTGAGAAGAAATGTGTAAAGAAACGCTTGTGCGGCAAACACAAATGTAACCaattttgttgcattgaaaTTGATCATTCATGTCCATTGCCATGTAATCGGCAATTAACATGTGGTAGGCACAAGTGTATGTTGACATGCCATTCAGGACGCTGTCTACCTTGTGTGGAGGCCAGTTTTGAGGAATTGTATTGTGAGTGTGGAGCAAGTGTTATATATCCACCGATTCCATGTGGCACTAAGCCACCCACATGTGATAGACCTTGTTCAAGGCCGCGACCTTGTGGACATGCGGTCGATCATAAATGTCATACTGGTCCATGTCCACCGTGTACTGTGCTGGTTAAAAGATGGTGTCACGGCAGACACGAACAACGTTCAGCTATACTATGCTATCAGGAGAATTTCAGTTGTGGCCTACCGTGCAGCAAGGATCTGCCATGTAAAAGACATAAATGTAACAAGCCTTGTCACGAGGAACCTTGTCCATTGCCTTGCCGACAGTCATGTACTGTACCACGTAAATTGTGTGGACATCCTTGTGGTGCTGCCTGTCACGATTCACCGTGCCCGGAAACTAATTGTAAGGCAACTGTTCCAATCACATGTCTGTGTGGATTGCTGAAAAGCACCAGGACGTGCTTAGAAGTTGCTGaggaatttaaaaatttgcaaatggcTCAAATGAAAGAGAAAATGGGTGCACTATCGAAAGATCAGTCTGTTGATTTGTctgatataaataatttgaagaaacCGGCTGTATTGAAAATattggAATGCACCGAGGAATGCCGTGTCCTAGAAAGAAATCGCCGACTTGCTATTGGTCTACAAATACGCAATCCTGATCTTGGACAAAAATTGATGCCAAGATATACGGATTTCCTAAAACAGTGGGCCAAAAAGGAACCAACCTTTTGTCAAAGAATCCACGACAAGTTGACAGATCTGGTGGAACTTGCAAAACAAAGTAAACAGAAGAGTCGTTCATTCTCATTTGAATCAATGAATAGGGATAAGCGACACGTTATCCATGAATTGGCACAATATTTTGGTGTGGAAACCGAAGCGTACGATGCTGAACCGAATAGAAATGTGGTAGCTACAGCCATCAGAGATAAGTCATGGTTGCCGAGTATGAGCCTCCTACAGGTGATACAGCGAGAGAATGGACAAAGGAAAGTGCCTAGACCAGTTTCAACTTCAGCCAAAACTCTGACTACATCAGAGAGTGTTTCATTGAAATTATCAAGTCACATGAATAGACCAGGACCTGCAAGCGGGACCCCTAATTGTAACAATAATCAAGatatgtaa
- Protein Sequence
- MESQGTDPLSQQVHFPQDNFESVGRSVRNSSNSDFNLCESNASSTSSNGRNQSGGRGNGQYGSGRLYVKPNGNRFKQNARRNNNRYNTEENLETPSASTSSNTKHYRNDNRSNTHRSESSQQNRYYRGYSKHMHGRDNGYNNLYFEHSSQASGSSEQPNWKENGITKRNHNYGNNSYTDYKGASRNNYSNNRSHDNFYRNGMSKDDDSSSRRGDADEFSHRGDRHNNRNRKEYPRSDVNKSKSWRNNDKNKKGFISARDKKLDNASQRERLIEMLNRRLLECLVCCEKIKEADRVWSCTLCFHIMHLRCLAAWAKSSKIENGWRCPACQNVYNEVPTQYMCYCGQVSDPKNSPGLIPHSCGGMCLRKGKSCDHKCTLECHPGPCPDCTVMVERECGCRATKQTVKCNSDMSILCDSVCNKLLDCQIHRCNLNCHIGKCNMCTEKIAQECYCGNSGRKVPCNAVNVNRTNYSCGEVCGKLLSCGNHNCTELCHDGQCGTCKTDVTIIKSCPCGKSSLENERSSCLSPIPSCDEICGKILRCGPSDNHHTCQEKCHDGDCPPCLLFTIVKCRCGNMDKKISCEIFVTNITVTCEKKCVKKRLCGKHKCNQFCCIEIDHSCPLPCNRQLTCGRHKCMLTCHSGRCLPCVEASFEELYCECGASVIYPPIPCGTKPPTCDRPCSRPRPCGHAVDHKCHTGPCPPCTVLVKRWCHGRHEQRSAILCYQENFSCGLPCSKDLPCKRHKCNKPCHEEPCPLPCRQSCTVPRKLCGHPCGAACHDSPCPETNCKATVPITCLCGLLKSTRTCLEVAEEFKNLQMAQMKEKMGALSKDQSVDLSDINNLKKPAVLKILECTEECRVLERNRRLAIGLQIRNPDLGQKLMPRYTDFLKQWAKKEPTFCQRIHDKLTDLVELAKQSKQKSRSFSFESMNRDKRHVIHELAQYFGVETEAYDAEPNRNVVATAIRDKSWLPSMSLLQVIQRENGQRKVPRPVSTSAKTLTTSESVSLKLSSHMNRPGPASGTPNCNNNQDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -