Casp021834.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- nfxl1
- Assembly
- GCA_958507055.1
- Location
- OY293828.1:9190586-9196910[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 5.4e+04 -7.8 5.6 15 19 161 165 160 165 0.81 2 19 0.13 3.5e+03 -0.3 0.4 4 10 196 202 195 202 0.95 3 19 3e-08 0.00081 20.9 17.0 1 19 210 227 210 227 0.99 4 19 1.6e-07 0.0043 18.6 17.3 1 18 263 280 263 281 0.99 5 19 0.45 1.2e+04 -2.0 0.9 6 10 306 310 305 310 0.93 6 19 3.1e-09 8.2e-05 24.1 10.4 1 19 316 334 316 334 0.97 7 19 0.84 2.3e+04 -2.9 0.9 6 10 359 363 358 363 0.86 8 19 3.8e-08 0.001 20.6 11.5 1 18 369 386 369 387 0.97 9 19 0.27 7.2e+03 -1.3 0.6 1 5 396 400 396 405 0.89 10 19 3.8e-05 1 11.0 15.9 1 18 421 438 421 439 0.92 11 19 4.5e-10 1.2e-05 26.7 13.8 1 18 448 465 448 466 0.97 12 19 0.63 1.7e+04 -2.5 1.2 5 10 494 499 494 499 0.92 13 19 7.8e-05 2.1 10.0 5.7 9 19 514 524 512 524 0.90 14 19 0.38 1e+04 -1.8 4.8 4 12 536 544 534 544 0.88 15 19 2 5.4e+04 -4.7 2.9 14 18 572 576 572 577 0.86 16 19 0.014 3.8e+02 2.8 3.9 1 11 613 623 607 627 0.82 17 19 0.25 6.6e+03 -1.2 1.2 5 10 640 645 640 645 0.95 18 19 4.5e-06 0.12 13.9 20.0 3 19 654 670 653 670 0.94 19 19 2.3e-07 0.0061 18.1 11.5 1 18 713 732 713 733 0.86
Sequence Information
- Coding Sequence
- ATGAATAATCTACCAAAGCCAAAAAATCCATGGAACAAATCCAATGCACTGCcaaagaaaatatcaaagaGCAAGTCTTCCCCAACTCCTGGAGAACTCAAATTCAAAGAGGCCCATAACAAGCTTCAAGCGGCCGTTAAAAAACATGTAAAGGAATATGAATCCTCTTCTGAAGAAGAAGAACTCGAGTCTGGGATTTTGATAGACGCAATACTCAAGAACTATCAAAGTTCTGGAGGAGAAAGTGAGAATATGAAAAGAACACAGGATTTTATTGAGGAGACTTTCGTATCAGGAGCCTCCACTTGCCTGATATGTATTTCTAAAGTTAGAAGAGATGATCACATATGGAGTTGCAAGAACTGCTATGCATTTTTCCACATAATGTGCATCCAAAGATGGTCAAAAGATACATTAACACATCAAAAGCAAGCACTGGAAGGACAAGTTCTAGTGAAACCTGCTAAACTAAGCTGGTGTTGCCCAAAATGTCGTTTCGAATATGAATCAGATCAAGttcctaataaatatttatgcttTTGCCAGAAAAGAGAGAATCCCAAGTTTGATCCCTACCTCGTGCCACACTCTTGTGGAGAAATTTGCAAAAAGAACCTCGTCCCAAACTGTGGTCACAAATGTTTATTACTCTGTCATCCAGgtcCTTGTCCACCTTGTCCGGTAACTGTATCAGTTTCATGTCACTGTTTGGGTCAACCACCAAGAACTCAAAGGTGTAGTCAAAAAGAATGGTCTTGTGGCAATCCATGCGGCAAAGGTTTAGGTTGTGGAAAACATGCTTGTCGTGAACCTTGTCATCCTGGATCGTGTAAACCGTGTGGAAAAAAGAGTATACAGAGATGTGTGTGTAAATCAGATCAGCAGCTACGAGATTGTGCAACTCCTGTTTGGCATTGTGAGAAGGTTTGCAATAAAGCTTTGGAGTGCGGCAACCACCGCTGTCCAGAAGTATGTCATGACGGTGTGTGCGACATGTGCTCCCTCTCAAAGCCCAGAACCTGTCCGTGCGGTAAAACCGCATATCAGCTACCCTGCACTGAAGACACTCCAAGCTGCCAGGACACATGCGATAAGCTGCTCCAATGTGGTATGCACACATGTAACAAAAGATGCCACAAGGACGATTGTGGTCCGTGCCTGGAAATTGTTGGGAAATTGTGTCGTTGTGGTCAACATTCCAAGGAAGTGCAGTGTTCCAAGCCTTATCTCTGCGATACAAAATGCAAACAGACTAAAGACTGCATGAAACATCCCTGCAATCGAAAGTGTTGTGATGGAAACTGTCCACCGTGCGAGAAACCGTGTGGGAAAACTTTGAGCTGTGGCAACCATAAATGTCCATCCATATGCCACCGAGGGCCATGTTATCCTTGCAACGAAACTGATATTGTGACATGCAGGTGTGGAAGTACAAAGGTATCAGTGCCTTGTGGACGAAAGCATCGAACAAAACCACCTAAATGCAACAAACCATGTCTattaCCACCCGATTGCCATCATCCAAGGAGAGAAAATCATAAATGCCATTTCGGGGACTGTCCTCCTTGTAGACAAGTATGCAACAAAACTCATACATCATGTCCACATCTTTGTGTAGCGCCGTGTCATTCATCTGTTCTGGTGAAACTCGAAGCACAGAAGGCTTCAATGCCTTGGGAACAGACAGGGCCACGTATCGAGAGAAGGGAATTACCTTGTCCAGATTGCATGGTGCCGATGCCTGTGACTTGTTTAGGTGAGCATGAAACAGCTAATTGGCCGTGTTATATGGCCAAACCGTCTAGTTGTGCAAGACTTTGCGGCAGATTTTTATCATGCGAAAATCATTTATGCAGCTTGCCTTGTCACCTCGTAGAAGGAGCAGTAGATAAGTTTGAGTCGGGAACAAACTGTGAAACCTGTGAGTCTCCATGTGAAAAGGAACGACCAGAAGGATGTCAACACGATTGCCCGAAGCCGTGTCATCCAGGGCCGTGCCCACCTTGCAAAAATATGTTGCGCATTAAATGCCATTGCGGTCTCAATCAGCTCTATGTAGCTTGCATTGACTGGTTAGATGTTTCTAAGAGAGAAGCATTGCAGTGCTGTGGGAACCAATGCCCCAAAGATTTTGAATGTGGCCATCGCTGCAAATCAATCTGCCATCCTGGTGCATGTCCGAACGCGAATCAGTGCAAGAAAAAGGTGAAAGTAACATGCAAATGCAAACGTCTCAAAAAAGAATTCTCCTGTGAATCGGTCAGAAATAAATCTGCTACAGTCAGCTGTGATGACATATGCATGGCAAAGAAGGAGGAACAGAGACAGATAACTGAAACAATGAATGCCCAGAAAAAGCTTGAGGAAGAACTTAAGAACCAAAAAGAGCTGGAGAAGTATCAAAGAATGTTTGAGGGTAAAAAGAAGACAAGGGACCGTCGACTCCATGATGAAGAAGAGGATCATGGGTTTTTACAACGATACAAGATTCTTTTGCTATCTTCCGCATTACTTGCATTTAGTTTAggaatttattatgttttttattag
- Protein Sequence
- MNNLPKPKNPWNKSNALPKKISKSKSSPTPGELKFKEAHNKLQAAVKKHVKEYESSSEEEELESGILIDAILKNYQSSGGESENMKRTQDFIEETFVSGASTCLICISKVRRDDHIWSCKNCYAFFHIMCIQRWSKDTLTHQKQALEGQVLVKPAKLSWCCPKCRFEYESDQVPNKYLCFCQKRENPKFDPYLVPHSCGEICKKNLVPNCGHKCLLLCHPGPCPPCPVTVSVSCHCLGQPPRTQRCSQKEWSCGNPCGKGLGCGKHACREPCHPGSCKPCGKKSIQRCVCKSDQQLRDCATPVWHCEKVCNKALECGNHRCPEVCHDGVCDMCSLSKPRTCPCGKTAYQLPCTEDTPSCQDTCDKLLQCGMHTCNKRCHKDDCGPCLEIVGKLCRCGQHSKEVQCSKPYLCDTKCKQTKDCMKHPCNRKCCDGNCPPCEKPCGKTLSCGNHKCPSICHRGPCYPCNETDIVTCRCGSTKVSVPCGRKHRTKPPKCNKPCLLPPDCHHPRRENHKCHFGDCPPCRQVCNKTHTSCPHLCVAPCHSSVLVKLEAQKASMPWEQTGPRIERRELPCPDCMVPMPVTCLGEHETANWPCYMAKPSSCARLCGRFLSCENHLCSLPCHLVEGAVDKFESGTNCETCESPCEKERPEGCQHDCPKPCHPGPCPPCKNMLRIKCHCGLNQLYVACIDWLDVSKREALQCCGNQCPKDFECGHRCKSICHPGACPNANQCKKKVKVTCKCKRLKKEFSCESVRNKSATVSCDDICMAKKEEQRQITETMNAQKKLEEELKNQKELEKYQRMFEGKKKTRDRRLHDEEEDHGFLQRYKILLLSSALLAFSLGIYYVFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -