Casp047738.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293832.1:46402478-46408939[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.094 14 7.8 3.8 1 23 101 124 101 124 0.96 2 15 0.016 2.4 10.3 1.2 1 23 138 160 138 160 0.97 3 15 0.0076 1.2 11.3 5.9 1 23 200 222 200 222 0.98 4 15 0.0086 1.3 11.1 5.2 1 23 228 250 228 250 0.98 5 15 0.028 4.4 9.5 3.3 1 23 266 288 266 288 0.98 6 15 0.013 2 10.6 4.3 1 23 354 376 354 376 0.97 7 15 1.5 2.3e+02 4.0 4.1 1 23 383 405 383 405 0.96 8 15 1.5 2.3e+02 4.1 0.6 1 19 413 431 413 435 0.87 9 15 0.11 17 7.7 2.6 1 23 441 463 441 463 0.94 10 15 0.00033 0.051 15.6 0.7 1 23 469 491 469 491 0.98 11 15 5.9 9.1e+02 2.2 0.6 1 23 498 520 498 520 0.87 12 15 3.8 5.9e+02 2.8 0.6 1 23 526 548 526 548 0.90 13 15 0.2 31 6.8 0.8 1 23 555 577 555 577 0.97 14 15 0.35 53 6.1 1.0 1 23 583 605 583 605 0.97 15 15 0.27 42 6.4 2.5 2 23 611 632 610 632 0.93
Sequence Information
- Coding Sequence
- ATGTGTGATGCTGTAGCTGATGTGCAAATGGGTCAATCACCACAGTTTAATACACATGAAAACGTATGTGTTACTATTAAAAAAGAGGCTGATGATGAATTGGAAACCCCAAacgaatcaaataaaattagagAAGGTCCAAATGAGACATCAGTCTCTGGACACAATGAATCATTGGAGAAAATAATTGATGACCCTATCGCTATCACCAATATTAAAACTGAAGTGGAGGAGACGATCACTGATGATAGCAATCCAGCTGACGAAACATTCACCAGTATCGACATCAAGAAAGAATTATATAAATGTGATCATTGTGAATACTTGACATTCGACAAATCTTCCTTAGATAGTCACCAAACTCGAAAACACTCTAATGAATCAGCACTACCCCATAAAACAACTGAATTTTTTAACTGCACAAAATGCAGCTTTGTAGCCAAAAATAAATCCGGCTTAGACAATCATTTACAATATCATATTGCCGATGAAAATGAATTATACTACAAGTGTGTTCAATGTAATTTTAgaacattatataaaaaatctcTGAGCTATCATATCTTGCATTCACACAATGCGACAAATGATCACACATACAAATGTGATAAATGCAAGTATACAACAAAGACATTATGCTATTTTCAAAGACACCAAGCAGTTCACAACGACGAGCGACCATTTTCGTGCAAACTTTGCAATTTTCGATGTAAAACAGCACCCGGTCTTAAACGACATCAACATATTCATAGAGAAACGGTGGCGGCGCTGGAACCACATTCGCAAATGACTGTTTACACatgtgaaatatgtttttttgttacaACTCATGATAATGAATTCACAAAACATATGTCGCAACATAACAGAAAATCAGATGGATCGTCcataaaaatggaaaaagatACAACAGAAACAGCTATTACGAACGAAGATGGTAGTGGACAagattatcatgaaattttcattaaaactgaACATGAAAAAGGCGAAGACAGTTATAATATGGATACTGCCAATGAAGCTACCCTATACCAAAACTACAAGCCATTTGGTAAACATAAATGCGAAATATGCGATTTTAGATCACGTACTCAAAAACAAATGAAGGATCACACAAAACTACACACCAAATTAGACGTGCCATTCAAATgcaaaaaatgttcattcaCCACAACAGACAAAATACGTCAAGACAAACATGAAAAAACCCACAAAAAATGGAAATCGAAACTATTCCAATGTAACATTTGCGAATTCACATCGAGAAGCATAATAAAAATGCATCGACACGAACCCATCCATCAAGATATACGGCCATTTCATTGTGGCACCTGTTCATTTCGAGCTACTTCACAGAAACAATTACGGCGACATGAAATCCTACACAAAACAGGATGGGAATACGAGTGTAAAAAATGTCGTTACGTCTCAAACAATCAAGCAGATCTCAACAATCATCGATTAATCCATAATGTAATAAAAGAAACATTCGAATGCAACAAATGCTCATTTATTGCAAAAACGGAAAACATACTACAAACCCACAAACTATTACACACCGAACACAGACCATACAAATGTGACCAATGCACATTTAATGCTTCATCAATGAACAGTATTCTACAACACAAACTTATTCACAAGCAATCTAATAATCGGTTCCATTGCCCCGAGTGTCCTTATATGACAAAGTGGCAGGCCCCGTACACAACTCATCTTAAAATGCACGATGGACAAGGACAATACAAGTGTGATCAGTGCACATATGCGGCATATTTGGAACCGACATTGCATAATCATCTTAGACTCCATATACGTAGGAAACTGTATTGTGATGAATGTCCGTTTATATGTAAGAATATAAAGCATATGGAACGTCATAAAATTGGTCATCAAGTTATTACCaattataataatgatgatAAGAAAGAAGATGTGAAGCATTTTGAGATGGTGCACCGTCGTGCTGCTGCAGCTGCTGCTAATGCTGAGGTGGTATCAGAGACGTGTCATCAGGAGAGTAGTAGTAGTTCAAATGATGcaaaaacaattattgaaaatgttggCAACAATAATGTAGATGGCGACGTACAGTTAGAAGGCAATAATGGTGAATGTACAGTATTCGTAGAAACCGGTTGTAGTGCTGCAGAATTATGCGATGCAGTTATTGAAACAGAGAAGGATGATCGAAGTATTGAAAGATTAGAATCATCTGCAACAGAAGATTCTATGAAAGTAAATGAAGATGTTGGCAATAATGACGATgataataaaatggaagaagagAGAATGGATATAACAGAAACAGCTAGTGATGAAATTTGTGCTACAAAACCagctttataa
- Protein Sequence
- MCDAVADVQMGQSPQFNTHENVCVTIKKEADDELETPNESNKIREGPNETSVSGHNESLEKIIDDPIAITNIKTEVEETITDDSNPADETFTSIDIKKELYKCDHCEYLTFDKSSLDSHQTRKHSNESALPHKTTEFFNCTKCSFVAKNKSGLDNHLQYHIADENELYYKCVQCNFRTLYKKSLSYHILHSHNATNDHTYKCDKCKYTTKTLCYFQRHQAVHNDERPFSCKLCNFRCKTAPGLKRHQHIHRETVAALEPHSQMTVYTCEICFFVTTHDNEFTKHMSQHNRKSDGSSIKMEKDTTETAITNEDGSGQDYHEIFIKTEHEKGEDSYNMDTANEATLYQNYKPFGKHKCEICDFRSRTQKQMKDHTKLHTKLDVPFKCKKCSFTTTDKIRQDKHEKTHKKWKSKLFQCNICEFTSRSIIKMHRHEPIHQDIRPFHCGTCSFRATSQKQLRRHEILHKTGWEYECKKCRYVSNNQADLNNHRLIHNVIKETFECNKCSFIAKTENILQTHKLLHTEHRPYKCDQCTFNASSMNSILQHKLIHKQSNNRFHCPECPYMTKWQAPYTTHLKMHDGQGQYKCDQCTYAAYLEPTLHNHLRLHIRRKLYCDECPFICKNIKHMERHKIGHQVITNYNNDDKKEDVKHFEMVHRRAAAAAANAEVVSETCHQESSSSSNDAKTIIENVGNNNVDGDVQLEGNNGECTVFVETGCSAAELCDAVIETEKDDRSIERLESSATEDSMKVNEDVGNNDDDNKMEEERMDITETASDEICATKPAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -