Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293831.1:22148420-22152695[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.059 9.1 8.5 0.4 1 23 99 121 99 121 0.97

2 7 0.0011 0.18 13.9 3.3 1 23 212 234 212 234 0.99

3 7 0.47 73 5.6 1.6 1 23 349 371 349 371 0.94

4 7 0.012 1.8 10.7 6.2 1 23 377 399 377 399 0.97

5 7 0.00046 0.071 15.1 1.3 2 23 439 460 438 460 0.97

6 7 0.0076 1.2 11.3 0.4 1 21 466 486 466 487 0.96

7 7 0.0012 0.19 13.7 1.0 2 23 519 540 518 540 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.059	9.1	8.5	0.4	1	23	99	121	99	121	0.97
2	7	0.0011	0.18	13.9	3.3	1	23	212	234	212	234	0.99
3	7	0.47	73	5.6	1.6	1	23	349	371	349	371	0.94
4	7	0.012	1.8	10.7	6.2	1	23	377	399	377	399	0.97
5	7	0.00046	0.071	15.1	1.3	2	23	439	460	438	460	0.97
6	7	0.0076	1.2	11.3	0.4	1	21	466	486	466	487	0.96
7	7	0.0012	0.19	13.7	1.0	2	23	519	540	518	540	0.96

Sequence Information

Coding Sequence: atgaaaagccCAAGAGCTGCTGATGATTATCAAATTTCCCTTAAAACTGAATCTACATGTGAAACAAAACTGACTTTACAAGAAGTGGAATACGATAGTAAAGACAATGTGTTGCCTAacaatgaaattgaaataaaagcaGATATATGTGGTGAGAGTTGTAATCAAGATTCAAAATGTGTTTTAGGTGAAGAAATTGTAATAGAATCAGCAGAATGTACTGTCGGCTCCGATACAGAAAAAAGCTTAATTTTGTCAGAAGACTTAGATGATGATGACATGGAAGTCAAAGTTTTCGTCTGCCAACAATGTTACTTTGTAACTCTTGACAATAATGAACTAATCAATCACATGTTAACCCATGGTGATCCTAGTGAAGTGGCCGAAGCCGACGAACAGAATGAATTAtgtaaatctaaaaataataatgaattgttGGAAAGTGAATTGGATGTCGTAATTTCAATCAAAGCTCCTAATTGTGAAAATATTCCTAATGCTGCAAAAAAGATAGCTGGGCAAACTGGTCATCCGGTTGAAAAATTACTGCCATTCCAGGGGAGCGTATCAAACAGGATTAGttttgaaTCTGAGCACGGAAACGACCATGACAGTGAGAAGAAGTTGGTTTTTTACAAATGCGAAAAATGCTATTACACTTCGGACGACAAATCCAAATTGAAACTGCATTCACGGACGCACTCAAAACAGAGAcctttcaaaacaaaaattattgatcTTGAATGCCAACAAACACCAGAGAAAATTCAAAAGATGTATCCTGATCATAGCAAAAtcgataacaaaaataaaaaagatcctGTTCCATTGACGGAATCATATGAGGATGATGTGTCTGTCAAAATGGAAGAAGAGAAATACCTCATAGATGaccatcaaatatttattaaaactgaAAAACAGGCAGATGCCAATTCCTTTTTATCTGAATCTGACACCAAGGATGAAAACAATTCACATACTAGGTGCTCGTTTCGAGCAAAGACTAAAATTGCTCTTGAATGCCATCAAATTGTGAGAGAGTTTCAGTGCGATGAATGTCCCTACCATGCCAAATCAGAACTATCACTCGAATATCACAAATACAATCACCGATTTCCAAGGGCGTTCAAGTGCAATAAATGTACCTACCAAACGACCACGAAGGCTTGTTTGTTCAGACACCAATCACTTCATTTTGAATCTGGTGAGCAGCAGAATGACAACGATATTACTGATGCATCCAACAAACATGTACCAAAGTCTGTTGCCAGCATTCCTATGGAAACATTAAAGAAAATGTTTCCTCGTCTAAAATGCGATAAATGTGATTACAGTACGATATATAGAGCTACATTGAAACAACATCAGTTGAAGCATACCGAAGTGCGACCATACAAATGTGACAAGTGTCCGTATCGAGCAAAAACTACATTCGCTCTCCGAATCCATCAAAAGGTCAGGAAGTTTGGGTGCGACGAATGTCCCTTCGATGCCAGATCGAGACAAGCGCTCAAATTTCACAAATACTGTCACCGCTTTGAAGGGCCATTAAAATGTAACATATGCACCTATCAGGCGAGAAATAAGTCTTCCTTGAAATTGCATCAACTCCTCCATGATGATAAGATAGAAAAAGCGCCATGCGGCAATTACATCTACTGGGCAATGCACTGGAAGAAATCCCAATCGATGCATCCTGATGATGATCATGATGATAGCAGAGATGGTGATCCGAATCCAGCAGTGGACGAATCGTATGATGATGGGGAATTGCTCGGTGTATCTTCTGTTGTCAAAGAGGAAAATTGGAAAATGTTAGATGATGGTTATGAAGAAGAATGGCACAATTTATCTGCCAAGGAGGAAGAAGAGGATATCATAGATGAAGAACatcataaatttattaaaactgAAAATGAGGCTGTTGTCAATGATTCCTTTAAACATGAATCTGATACtcaacaaataaaatcacaAGGGGGGAGCAGCATATCAAGCGTCacaaatgatgaaaaaaaatcatataccaGGTGA
Protein Sequence: MKSPRAADDYQISLKTESTCETKLTLQEVEYDSKDNVLPNNEIEIKADICGESCNQDSKCVLGEEIVIESAECTVGSDTEKSLILSEDLDDDDMEVKVFVCQQCYFVTLDNNELINHMLTHGDPSEVAEADEQNELCKSKNNNELLESELDVVISIKAPNCENIPNAAKKIAGQTGHPVEKLLPFQGSVSNRISFESEHGNDHDSEKKLVFYKCEKCYYTSDDKSKLKLHSRTHSKQRPFKTKIIDLECQQTPEKIQKMYPDHSKIDNKNKKDPVPLTESYEDDVSVKMEEEKYLIDDHQIFIKTEKQADANSFLSESDTKDENNSHTRCSFRAKTKIALECHQIVREFQCDECPYHAKSELSLEYHKYNHRFPRAFKCNKCTYQTTTKACLFRHQSLHFESGEQQNDNDITDASNKHVPKSVASIPMETLKKMFPRLKCDKCDYSTIYRATLKQHQLKHTEVRPYKCDKCPYRAKTTFALRIHQKVRKFGCDECPFDARSRQALKFHKYCHRFEGPLKCNICTYQARNKSSLKLHQLLHDDKIEKAPCGNYIYWAMHWKKSQSMHPDDDHDDSRDGDPNPAVDESYDDGELLGVSSVVKEENWKMLDDGYEEEWHNLSAKEEEEDIIDEEHHKFIKTENEAVVNDSFKHESDTQQIKSQGGSSISSVTNDEKKSYTR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -