Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293829.1:9724199-9725943[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0041 0.63 12.1 3.7 1 23 152 174 152 174 0.98

2 12 0.0041 0.63 12.1 2.6 1 23 183 205 183 205 0.98

3 12 0.34 52 6.1 3.0 2 23 213 234 212 234 0.95

4 12 0.09 14 7.9 9.4 1 23 243 265 243 265 0.97

5 12 0.00024 0.037 16.0 3.8 1 23 274 296 274 296 0.98

6 12 0.075 12 8.1 6.2 1 23 301 323 301 323 0.97

7 12 0.00063 0.098 14.7 2.4 2 23 333 355 332 355 0.97

8 12 0.17 27 7.0 1.8 1 20 363 382 363 383 0.95

9 12 0.47 73 5.6 3.2 1 23 388 410 388 410 0.96

10 12 0.00094 0.14 14.1 3.5 1 23 442 464 442 464 0.98

11 12 0.0076 1.2 11.3 2.9 1 23 473 495 473 495 0.97

12 12 2.2 3.4e+02 3.5 1.8 1 21 501 521 501 522 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0041	0.63	12.1	3.7	1	23	152	174	152	174	0.98
2	12	0.0041	0.63	12.1	2.6	1	23	183	205	183	205	0.98
3	12	0.34	52	6.1	3.0	2	23	213	234	212	234	0.95
4	12	0.09	14	7.9	9.4	1	23	243	265	243	265	0.97
5	12	0.00024	0.037	16.0	3.8	1	23	274	296	274	296	0.98
6	12	0.075	12	8.1	6.2	1	23	301	323	301	323	0.97
7	12	0.00063	0.098	14.7	2.4	2	23	333	355	332	355	0.97
8	12	0.17	27	7.0	1.8	1	20	363	382	363	383	0.95
9	12	0.47	73	5.6	3.2	1	23	388	410	388	410	0.96
10	12	0.00094	0.14	14.1	3.5	1	23	442	464	442	464	0.98
11	12	0.0076	1.2	11.3	2.9	1	23	473	495	473	495	0.97
12	12	2.2	3.4e+02	3.5	1.8	1	21	501	521	501	522	0.92

Sequence Information

Coding Sequence: atggaagaCGCTCTGTATCCAGTTGACGAGATTAAAACTGAAAATGATACAATTGAAGATTCTGACATTCCTACCaataatgatgatgatttagTTGAAGATCCTGAAATGCCTGCTAATAATGATGTGAGTGACGATCCTGAAATCCCTTATTATGATGCGCCTGAATTAGTAACAGTAAAGTTGGAAACGTATGATGAGCCAGATAATTCTATGCTTAAAATTGAAATCAGTGAAGATAGCTTATCAATGAATGGATGGGATGTCTCCTCAGAAGAACACTCTGCGGAAAATGTAAACGACGCTGATTTTAATTTGGAATGTTTTACATGTTGTTTCAgcaacaaatataaatatctacCACCAGAAGGCTCATTTGGATCTCACGATTTGATAGGCTTCAAAACAGCCAAATGTGATCAATGTTCTTATAAATCAGCATTAGATCTACCATTCAAATGTAAACTGTGTCCATTTCAAACGAAACAATCAAGATATTTGAAGAAACACGAACTCAAACATAAAAACCCCTTGGAAGTGGAAATGTTTCAGTGTGATAAATGCGATTATGCCACCAAATACAAGCATTATCTGCCTGTACATATGCTGAAGCATGAAGATCCTTCCAAGATCTTACGTTGTGATCAGTGCAGCTATGAAACCATGTATAAGCGCCACTTGCAAGAGCACAAGCTAAATCATGATGACCCATCAAAAGCTACCGTCTACAAATGCCATCAATGTCAATACCAGACACGACATAAACGCTATTTAACCAAACACTTTCTCAACCACAGAGATGTCTCTCAAGTGACAATCTTCAAATGTGATCAATGTAGCTATGAGACACGGCAAAAGGGCAACCTTACCCATCACCTGACTACGCATGGTGATTACCAGTACATTTGTGATCACTGCAATTTCCAAACAAAACATAAATACTCATACGAAATGCACCAACTGAATCACAAGCTACCCACTGAGGTAGAGATGCTGAAATGCCCCAATTGTGAGTATGAGACTGTCCACAAACGTTACCTGTTACGGCATATTCGCAAGCGACACGGCAAACCGCAATTGAAAGTTCACCAATGCAGCAAATGCTCGTTTGAAACAAAAGATAGAACCAAGCTGCGTGAGCATCGAGTGGGCTGTAATGTGTTCAAGTGTCAGCTGTGTAATTTTCAaagtaaatacaaaaaaagctTTCTCGATCATGTGGTTAAGCATGATTTTATCCAAGATTCCAATAATGATCCACTCAAAACAGATAAACGCAACTTTTCCGCACGCTATCTCAACAGCTTGAATAATGGCAACGAGTTCAAATGTCCGACATGTTCATTCCATGCCAAGACGAAAGAGTATCTGAAGAGGCATCAATTGGTACACAAGAATCAATCAGAGATTAAGGTGCACAAGTGTGATCAATGtgatttccaaacaaaatatcGCAGCAGTCTTGTCACGCACTACATCATCCATCAGGAGAGAACATTGTACAAGTGTACGATGTGTAGTTTCCAGTCGAAGTGGAAGAATGCCTTCCGAAGACATCAATTGAAAACGTGCAAAGATCCAGCTGAAGCTGAAGGTGTCATTAAATTAGAGGATGGGCAGCTGGTGAcgatttga
Protein Sequence: MEDALYPVDEIKTENDTIEDSDIPTNNDDDLVEDPEMPANNDVSDDPEIPYYDAPELVTVKLETYDEPDNSMLKIEISEDSLSMNGWDVSSEEHSAENVNDADFNLECFTCCFSNKYKYLPPEGSFGSHDLIGFKTAKCDQCSYKSALDLPFKCKLCPFQTKQSRYLKKHELKHKNPLEVEMFQCDKCDYATKYKHYLPVHMLKHEDPSKILRCDQCSYETMYKRHLQEHKLNHDDPSKATVYKCHQCQYQTRHKRYLTKHFLNHRDVSQVTIFKCDQCSYETRQKGNLTHHLTTHGDYQYICDHCNFQTKHKYSYEMHQLNHKLPTEVEMLKCPNCEYETVHKRYLLRHIRKRHGKPQLKVHQCSKCSFETKDRTKLREHRVGCNVFKCQLCNFQSKYKKSFLDHVVKHDFIQDSNNDPLKTDKRNFSARYLNSLNNGNEFKCPTCSFHAKTKEYLKRHQLVHKNQSEIKVHKCDQCDFQTKYRSSLVTHYIIHQERTLYKCTMCSFQSKWKNAFRRHQLKTCKDPAEAEGVIKLEDGQLVTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -