Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293830.1:1606380-1610316[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00014 0.021 16.8 1.2 1 23 109 131 109 131 0.98

2 10 0.0049 0.76 11.9 0.3 2 23 167 189 166 189 0.96

3 10 0.021 3.2 9.9 0.9 1 23 198 220 198 220 0.95

4 10 0.036 5.6 9.1 0.5 1 23 255 277 255 277 0.95

5 10 0.0071 1.1 11.4 1.5 1 23 283 306 283 306 0.95

6 10 0.00023 0.036 16.0 3.0 1 23 312 334 312 334 0.98

7 10 0.11 17 7.6 0.4 1 23 358 380 358 380 0.96

8 10 0.064 9.9 8.4 1.7 1 23 513 535 513 535 0.97

9 10 0.022 3.3 9.8 1.7 1 23 541 564 541 564 0.97

10 10 3.1 4.7e+02 3.1 0.4 2 23 570 592 570 592 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00014	0.021	16.8	1.2	1	23	109	131	109	131	0.98
2	10	0.0049	0.76	11.9	0.3	2	23	167	189	166	189	0.96
3	10	0.021	3.2	9.9	0.9	1	23	198	220	198	220	0.95
4	10	0.036	5.6	9.1	0.5	1	23	255	277	255	277	0.95
5	10	0.0071	1.1	11.4	1.5	1	23	283	306	283	306	0.95
6	10	0.00023	0.036	16.0	3.0	1	23	312	334	312	334	0.98
7	10	0.11	17	7.6	0.4	1	23	358	380	358	380	0.96
8	10	0.064	9.9	8.4	1.7	1	23	513	535	513	535	0.97
9	10	0.022	3.3	9.8	1.7	1	23	541	564	541	564	0.97
10	10	3.1	4.7e+02	3.1	0.4	2	23	570	592	570	592	0.91

Sequence Information

Coding Sequence: ATGGATTCATCTGCAAACGATGAgaataacaagattatttttactGAAAATGAGAATCTAGAAGGTTCTGATGAAAGTATTACCGACTCAAATAAAGCATCGCTTCTTGAAGATGAAGAATTGTTGCACAATAAATTTAATGATGCCTTTGAGGTCTCACAAAATTTTGTCGTAGATGATGATGAAAGtatattcattcaaaataaagaCGAGGGAGGAGAAGAAGTTGAGGATTATTCTCATCAGGATTCGCAAGTCATTTGTTTTGAATCAGGTTCAAATCATGCTTCACTTGATAAAGAAGACGATACTATTGATTTGATTTACCAATGCGATGAATGCGATTACATGACTAAGATTAAAAGTAATCTTAGTAAACATAAAATATCGCACAAGGAAGACAGACCATACGAATGCGATAAGACTCCAAACAGGTCAAAGAAAAGAAAGCGTTTGACAATTCATGAAGTGGTCCAAGAGGAAGAAATGACCAAGCTCATGTGTGATGAGTGTGACTTTGAGACAGATACGCTAATCAATCTTGAGCAACACTACAGAAGATACCATGAGAACAGAACTTTGGTTGAAACATTCCTCTGCCAAAAATGTGATTATCAAACTAAGAACAAGATTCTCATTGAGAACCATATGCAGTTACATATTGATCATACGCAAGAAGGAAACGATGAGGACTTAGATTACAAATCCATGTACAAGTCTGAGCTGAACGAGCTCCGAAAATCACACACGTTAAGAAAGACATACAAATGCAAAAAATGTCCCTTCAAATCAGCGTCACAAGATGGCATCGAAAAACACGAATCACTACATACAAATACAAAACCGTACCGTTGTACAAAGTGCCCTTTCAGGGCCATGACAAACTTCAATCTCAACCGACACCGGTCGTTGGTACATGGCCAGATGCCGTTATACAGGTGCCATGAATGTTCCTTTTCCACAACAACTGAAGCCTATCTTCAAAAACATCAATCAATCCATTCCCAAAAGAGTGCTAAAACACACAATGGTCATTATCAAGTAATCCTCAATGATCAGGGAATGTACAGGTATGCTTGCTTGAAATGTAATTATGTATCGAAATTCATTGGAAATATCAAAAAGCACCAAGTGATACATTCTAAAATGATAAATGCTAAAGTGGAAAACAAGCCAAGTTTCAGCGAAGATGCCATTGTTCTTTCTGAAACACCGAATGAACTGAGCGAAAACGGGCAAGATCAGTATCAGCAGCCTGCGGGTTCTGGAGATGAAGATGATAACATACAGCAGGAGAGTGAATCTAATGTTCTGACTCTTGAGGCAGATATCTCTGATGCTGATAGCCATGGTTATTCCATAGAAAATACTGAATCAGAACAAGTCGATGAAGAATGTGCTTATCAAATGACAGAATCCATCATGtcggaagaaataataaatacagagGAGGAGGGAAACTCTTCAATTACcagTGTCGTAGACAACACTACTGCTGCATTATTGCAGCAAGAAGAACAAAACCGTTCAGCGCGTTTCTTCTGCGACAAATGCGATTACCGGGCCGAATATCCGTATCAAATAAATCATCATCAAATCAGCCATAGTGACTATAGGCCATACCAGTGCGATAGATGTTCGTACAGTGCAAAAACTGAAAACTATCTCAGATTACACTTGACCAGACGACACAAGAGCGTTTTCAGAAAATGCACCAAATGCCCATTCACAGCAAGTGCAGAGGACGAGATGCGTTTACACTTTAAGAACGTTCACAAAATTATATTACCCAAGCCCCACATCATGGGTAATGTTGGTGGAAATTAA
Protein Sequence: MDSSANDENNKIIFTENENLEGSDESITDSNKASLLEDEELLHNKFNDAFEVSQNFVVDDDESIFIQNKDEGGEEVEDYSHQDSQVICFESGSNHASLDKEDDTIDLIYQCDECDYMTKIKSNLSKHKISHKEDRPYECDKTPNRSKKRKRLTIHEVVQEEEMTKLMCDECDFETDTLINLEQHYRRYHENRTLVETFLCQKCDYQTKNKILIENHMQLHIDHTQEGNDEDLDYKSMYKSELNELRKSHTLRKTYKCKKCPFKSASQDGIEKHESLHTNTKPYRCTKCPFRAMTNFNLNRHRSLVHGQMPLYRCHECSFSTTTEAYLQKHQSIHSQKSAKTHNGHYQVILNDQGMYRYACLKCNYVSKFIGNIKKHQVIHSKMINAKVENKPSFSEDAIVLSETPNELSENGQDQYQQPAGSGDEDDNIQQESESNVLTLEADISDADSHGYSIENTESEQVDEECAYQMTESIMSEEIINTEEEGNSSITSVVDNTTAALLQQEEQNRSARFFCDKCDYRAEYPYQINHHQISHSDYRPYQCDRCSYSAKTENYLRLHLTRRHKSVFRKCTKCPFTASAEDEMRLHFKNVHKIILPKPHIMGNVGGN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -