Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293828.1:89386449-89388647[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00027 0.041 15.8 1.1 1 23 293 315 293 315 0.98

2 15 0.00019 0.03 16.3 2.2 1 23 321 343 321 343 0.99

3 15 0.46 71 5.7 5.3 1 23 349 371 349 371 0.98

4 15 0.0064 0.99 11.5 4.6 1 23 377 399 377 399 0.98

5 15 0.02 3 10.0 1.7 1 23 405 427 405 427 0.98

6 15 0.002 0.31 13.1 2.0 1 23 433 456 433 456 0.97

7 15 4.5 7e+02 2.5 1.7 6 23 483 501 481 501 0.84

8 15 1.5 2.3e+02 4.1 1.9 1 23 507 529 507 529 0.95

9 15 7.3e-06 0.0011 20.8 3.6 1 23 535 557 535 557 0.97

10 15 1 1.6e+02 4.6 7.5 1 23 563 585 563 585 0.98

11 15 0.0015 0.23 13.5 2.9 1 23 591 613 591 613 0.98

12 15 0.091 14 7.9 3.3 1 23 619 641 619 641 0.98

13 15 0.0018 0.28 13.2 3.7 1 23 647 669 647 669 0.99

14 15 1.1 1.7e+02 4.5 1.1 1 23 675 697 675 697 0.94

15 15 8.7e-06 0.0013 20.5 3.2 1 23 703 725 703 725 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00027	0.041	15.8	1.1	1	23	293	315	293	315	0.98
2	15	0.00019	0.03	16.3	2.2	1	23	321	343	321	343	0.99
3	15	0.46	71	5.7	5.3	1	23	349	371	349	371	0.98
4	15	0.0064	0.99	11.5	4.6	1	23	377	399	377	399	0.98
5	15	0.02	3	10.0	1.7	1	23	405	427	405	427	0.98
6	15	0.002	0.31	13.1	2.0	1	23	433	456	433	456	0.97
7	15	4.5	7e+02	2.5	1.7	6	23	483	501	481	501	0.84
8	15	1.5	2.3e+02	4.1	1.9	1	23	507	529	507	529	0.95
9	15	7.3e-06	0.0011	20.8	3.6	1	23	535	557	535	557	0.97
10	15	1	1.6e+02	4.6	7.5	1	23	563	585	563	585	0.98
11	15	0.0015	0.23	13.5	2.9	1	23	591	613	591	613	0.98
12	15	0.091	14	7.9	3.3	1	23	619	641	619	641	0.98
13	15	0.0018	0.28	13.2	3.7	1	23	647	669	647	669	0.99
14	15	1.1	1.7e+02	4.5	1.1	1	23	675	697	675	697	0.94
15	15	8.7e-06	0.0013	20.5	3.2	1	23	703	725	703	725	0.99

Sequence Information

Coding Sequence: ATGGAAGACCATGATTATTGCAAAATTACCATCAAGACTGAAGTGGACGATGCGCATGAAAATGGTAATCATGACGCCAACTCCGTCCTGCCTTTAGGACACCGATTAAGCATGAGAGACAAAGATACATATTTAACCGAAGTGAAGGTCGAATCTGATCAAGGTACAGAAGATAAAAATGAGGAGCCTTCTTTTGTCTATGATGAATTTTGCAATGAAGAGAAAGGATTCAACATTAGCATGATAAAAACTGAGAGTACGACCGAAAATGTCGTTTGTGATGCGAAATCCATCATATCTGAAGGGCATAAGTCAAGCATggcagaaaattatttaaataaagtgAAGCTTGCACCTGATGAAGGATCAGCACATGAAAATGAAGAGCTTCTGTTCGCAAGCAAATGCAAAAATGAAATGGAGGTAGACATTTatgatgaattttataatacagATGCAAGATCTATTTTATTTGAAGAATTCAATAATAGTAGCATGATTAAAGCTGAAAGATCTTCTGAAATCACGTTAGGGTCGGGTACAGACTCTGCTACTAAAACAATAGATGCTGGGAATATAAAATCACAGTACAAATATGACAGCAAGATAATGCAAGAACTACAGCTAGAATCCGAAAAAATGTCAGTTTTGGAAGAAGAAAATGTGGATAAATATATTAAACTGGATCATACATATCCAAAATCTATTCATTACGACAAATTCAACACAGTAGATATTGATGATGATACAAATACTGCTAAAGGAGAAAACTCTGGCAATGAAAATCTATTGTACAAATGTGATAAATCTGATTCCATTCGAAATGAAAAATCTTGTGTAGCTCAGCACAAAAAAGAGCATTTAGAAACGGAACTTTTCCAATGTGATAAATGTTCCTTCGAAACTAAGACTGAAGGAAATTTGCAACGACATCGATTGGTACATACCGAAGACATTTCATTCAAATGCGATAAGTGTGATTACTCAGCAAAGAATGAGACTACACTGAAACAGCACCAAATGAAACACGCTGGAGAGCCGCTTTTCAAGTGTGATAAGTGTTCCTACGAAACTAAGTTTCAGTTCTGTATCCAAAAACATCAACTTGTGCATACAAAAGAAAAGCCATTTAAATGCGATAAGTGTTTCTTCAAAacgaaaacaaaacaatatttaaaaatacatcaactCATGCATACAAAAGACAAGCCATTTAGATGCGACAAGTGTTCTTACGAAACTAATATTAAATCCCGTCTAAAACAACATCAACTCGTGCATACGGAAGAAAGACCCTTCAAATGCGATAAGTGTGATCGTGCAATGAAGAGCCAGGTTTCACTGGAACACCACAAAATGAGGATACATCCAGAAGCTGAACCATTAAATTGTCATGAGTACTCCTTCCAAACTGAAACGGATGAAAGACGAATAATCAAATCTGAGTGTGATAACTTGGCAAAGAGCAAGACGACATTGAAAATGCATCATCGAACGAAGCACTCAGAATTGAAACCATTCAAGTGCAATAAGTGTTCCTACCAAACAAAGATTGAATTCCGCATGGAAAATCATCAGCTCGTACATtcggaaaaaaatctattccaaTGCAATGAGTGTACTTACAGATTTAAGACTAAGGAAAATCTCCGAAAGCATAAACTCCTGCATTCGAAAGAAAAGAGATTCAGATGCGAAAAGTGTTCTTACCAAACAAATGCTAAATGCCACTTCCAAAAACATCAATCTGTGCATACAGAAGAACGGCCATTTAAATGCGATAAATGTAATTACGCAGCCAAGAACCAACTTCATCTGAAAAACCACCAAACAATACATTCAGAAGTGGCGCCATACAAGTGTAATCAATGTTCCTTTAAAACTAAGAATGTATCATCGTACTATTATCATCAACTTGTGCATTCAGAAGAAAGGCCATTCAAATGCGACAAGTGTGATTACCTAGCAAAAAGTAGGAATTATCTGAAGCGACATCAAAAGAAACATTCAGAATCGAAGCCGTTCAAGTGCGATAAGTGTCCCTttcaaactaaaataaaattgtatattcaAAATCATCAAGACGTGCATACGACAGAAAGGCCATTCAAATGCGACAAGTGTGATTACTCAGCAAAGCGCAAGAGAAACCTGAAACAGCACCAAATGACACACTCAAAAGTAGAGCCATTCAAATGA
Protein Sequence: MEDHDYCKITIKTEVDDAHENGNHDANSVLPLGHRLSMRDKDTYLTEVKVESDQGTEDKNEEPSFVYDEFCNEEKGFNISMIKTESTTENVVCDAKSIISEGHKSSMAENYLNKVKLAPDEGSAHENEELLFASKCKNEMEVDIYDEFYNTDARSILFEEFNNSSMIKAERSSEITLGSGTDSATKTIDAGNIKSQYKYDSKIMQELQLESEKMSVLEEENVDKYIKLDHTYPKSIHYDKFNTVDIDDDTNTAKGENSGNENLLYKCDKSDSIRNEKSCVAQHKKEHLETELFQCDKCSFETKTEGNLQRHRLVHTEDISFKCDKCDYSAKNETTLKQHQMKHAGEPLFKCDKCSYETKFQFCIQKHQLVHTKEKPFKCDKCFFKTKTKQYLKIHQLMHTKDKPFRCDKCSYETNIKSRLKQHQLVHTEERPFKCDKCDRAMKSQVSLEHHKMRIHPEAEPLNCHEYSFQTETDERRIIKSECDNLAKSKTTLKMHHRTKHSELKPFKCNKCSYQTKIEFRMENHQLVHSEKNLFQCNECTYRFKTKENLRKHKLLHSKEKRFRCEKCSYQTNAKCHFQKHQSVHTEERPFKCDKCNYAAKNQLHLKNHQTIHSEVAPYKCNQCSFKTKNVSSYYYHQLVHSEERPFKCDKCDYLAKSRNYLKRHQKKHSESKPFKCDKCPFQTKIKLYIQNHQDVHTTERPFKCDKCDYSAKRKRNLKQHQMTHSKVEPFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -