Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293828.1:40022746-40024221[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.5 2.4e+02 4.0 2.0 9 20 163 174 146 176 0.80

2 8 1.2e-05 0.0018 20.1 2.5 1 23 183 206 183 206 0.96

3 8 0.0009 0.14 14.2 0.1 3 23 214 234 213 234 0.97

4 8 8.5e-05 0.013 17.4 2.3 1 23 240 262 240 262 0.97

5 8 3.3e-05 0.0051 18.7 0.4 3 23 270 290 268 290 0.96

6 8 8.1e-05 0.013 17.5 3.0 1 23 296 318 296 318 0.98

7 8 0.39 59 5.9 0.6 2 23 326 345 325 345 0.87

8 8 1e-05 0.0016 20.3 1.1 1 23 351 374 351 374 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.5	2.4e+02	4.0	2.0	9	20	163	174	146	176	0.80
2	8	1.2e-05	0.0018	20.1	2.5	1	23	183	206	183	206	0.96
3	8	0.0009	0.14	14.2	0.1	3	23	214	234	213	234	0.97
4	8	8.5e-05	0.013	17.4	2.3	1	23	240	262	240	262	0.97
5	8	3.3e-05	0.0051	18.7	0.4	3	23	270	290	268	290	0.96
6	8	8.1e-05	0.013	17.5	3.0	1	23	296	318	296	318	0.98
7	8	0.39	59	5.9	0.6	2	23	326	345	325	345	0.87
8	8	1e-05	0.0016	20.3	1.1	1	23	351	374	351	374	0.97

Sequence Information

Coding Sequence: ATGTACAATGATAGTGTTTACCATGAGtgtgataaattttataaaccAGCTAATAGCAGTGTTAGTTATGTGAACTCTTCGGATTATAATTTCACTGGATATGACCGAGTTCAAGAGAATACAGACTTCTTCCATTTCCAGAACTTTCAATTCGAGCCAATCAATACTCCAATAGATCAACAAACGGAAGGTTCACACGAAGAGAGCGATATAATTGTTGAAGCATCCGATGATGAAGTAACAGATTACAGCGAAGATCAAGAAAGAAGGCCAATGGATCCAATGAATAGATGCCTTATTTGCAATATAGCATATACTCCTCTAGGAACTCAGTTTTACTCTTTGACAAATGAACGACCCTTAACAATGTCCAGTCAGAAGCCTGTGATTACAAATATCATCGAAATTCTAGGACATATCTTCCATAAACAAACCTACATTTGCAGTGAATGTTTAGGACTTCTAAATTCTATTGATCACTTGCaaGATTTCAGAACGAAATCGAATTTGAAAGATCACGAAAACAATTGTTTGGGTCTTCTGTCATTCGAATGCAGATATTGTGATAAGAGATTTCCAACTTCAACAAAACTTAAGAATCACGTTAAATTGAAACATGACAAGAAATTTATAGCGATATGTTCGATTTGTAACATAGGTTTCATCAAAGTATCCGATTACAAAAGTCACATGGTAACCCATAGTACAGATAAAAAATTCAGCTGTAGCAAATGTGAGAAAAGCTACAAATCATTgagcaatttaaattttcatatgaAAGCTCACGATGATAAGCTGAAGCTCGCTTGCCATATATGTGGCAAAGGATTCATGCGAAAAGAATACTTGGACGCTCATGTTAATAATCATAACGGCATCAAAAACTATAGATGCTCCATTTgcgaaaaaaagtttttttcacaaaaaagtttGGACTCTCATCTAAAATACCATGATGtaacaataacaaagaaaaGTTGCAGCATATGCGGTAAAGTTTTGGCCGCCGGCATTCAGGAGCATATGCGAATTCATAATAACTTGAGGGAATTTGAGTGTGCAAATtgtgatatgaaatttaatacaaaGGGGACCTTGAGGAAACACATCATAAAGAAACATTCAGGTAACTGTTGA
Protein Sequence: MYNDSVYHECDKFYKPANSSVSYVNSSDYNFTGYDRVQENTDFFHFQNFQFEPINTPIDQQTEGSHEESDIIVEASDDEVTDYSEDQERRPMDPMNRCLICNIAYTPLGTQFYSLTNERPLTMSSQKPVITNIIEILGHIFHKQTYICSECLGLLNSIDHLQDFRTKSNLKDHENNCLGLLSFECRYCDKRFPTSTKLKNHVKLKHDKKFIAICSICNIGFIKVSDYKSHMVTHSTDKKFSCSKCEKSYKSLSNLNFHMKAHDDKLKLACHICGKGFMRKEYLDAHVNNHNGIKNYRCSICEKKFFSQKSLDSHLKYHDVTITKKSCSICGKVLAAGIQEHMRIHNNLREFECANCDMKFNTKGTLRKHIIKKHSGNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -