Casp027792.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293828.1:89370713-89372488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0002 0.031 16.2 2.2 1 23 170 192 170 192 0.98 2 14 0.0027 0.42 12.7 3.6 1 23 226 248 226 248 0.97 3 14 0.2 31 6.8 5.4 1 23 254 277 254 277 0.94 4 14 0.002 0.3 13.1 1.3 1 23 283 305 283 305 0.98 5 14 0.022 3.4 9.8 3.7 1 23 311 333 311 333 0.95 6 14 0.0014 0.22 13.5 2.4 1 23 339 362 339 362 0.94 7 14 0.045 6.9 8.9 1.6 1 23 369 391 369 391 0.98 8 14 0.018 2.8 10.1 2.2 1 23 397 419 397 420 0.95 9 14 0.0014 0.22 13.6 1.9 1 23 426 449 426 449 0.93 10 14 0.0042 0.65 12.1 4.2 1 23 455 477 455 477 0.98 11 14 0.00033 0.051 15.5 1.5 1 23 483 505 483 505 0.98 12 14 0.019 2.9 10.0 0.8 1 23 511 533 511 533 0.98 13 14 0.0011 0.16 14.0 0.5 1 23 539 561 539 561 0.98 14 14 0.085 13 8.0 0.8 1 23 567 589 567 589 0.95
Sequence Information
- Coding Sequence
- ATGAACTACGATTATCAACAAGTTGCTATCAAGAGTGAAGTGGAAGATGTTGTTGAAAACAGTAGCCTTCAAAGACGCCCATTGAACCAGAGACCGAATAACCAAAACTGGGCCATGATTATGCAAGAACATAACTAccataaaatttatatcaaaagtGAGGATACTTGGGATAAATGCTCTGATGAAAGAGAATTGCACGAATCACGTATGGGTGGAGAAATAATTAACTTTATCGATGTCAAGCTTGAACCTGGAACAAATCAAGACGATCAGAATGAGGAGCTTTTGTTTGCTGATAGTTATAAAATTGAAGTAGATGATGAGCAATATGGTGAATTTTACAATACAGATGCAAGAACTATTTACTCTGAAGAGTCTAACACAAGTATGGCAAAGTCAGAGCCATCGTCCGAGGACAGCTGTGAATCAAGTGATATGCAAGTGCAGGATAGAAGAAGTAATAAGAATACACGAAAGAggcaactaaaaaaaaatagccgcacatttgagtgtaataaatgttcttataaagcaaaaaataaaatacaacttACAAGACATCAGCTCACTCATCAAGAAGGTAAGGAATTGAAATGTGATAAATATTCTTATAAATCGGATATAAAAATAGATCTTACACATCATCAGCTAGTTCATTCAGAACTAAAACTATTCGAGTGCGATAAATGCACCTACAAGGCAAAATCAAACTATCACTTGTTACGACATCAATATGTTCACACACAAAAACGGTCATTTAAGTGCAAGCAATGTCCTTATACGGCAAAATGTAAAACACATCTAAAGAAACATCAAGCAGAAGTCCATACAGAAGTGAAACAATTTGAATGTGACAAATGTTCATATAAAACAAATCGAAAAGTAAACATCACACAACATCAGCTAGTCCATACGAATGTGAAACCTTTTGAGTGCGATAAATGTAACTACAAGGCAAAATCAAAATACCAAATTAAACGacatcaatattttcatatacaaGAACGGTCATTCAAGTGCGACCAATGTTCTTATAAGGGAAAAACTAAACAACATCTAGAGAGACATCAAGCAGAAGTCcatacagaaataaaaaaacagttcgAATGTGACAAATGTTCATACAAATCAAATCGAAAAGAACGCATCACTCAACATCAGCTAGTCCATACGAATGTGAAACCATTCGAGTGCGATAAATGTGCCTACAAGGCAAAAACAAAATCCCAAATTATACGACATCAATACATACATCATACACAACAGTCGTCATTCGAGTGTGACCGATGTTCTTATAAGACAAAAACTAAAACACAACTCAACAGACATCGAGAAGAAGTCCATACAGAAGTAAAACAATTCGAATGTGACAAATGTTCATATaaaacaaatcgaaaaacacACATCACACGACATCAGCTGATACATTTACCGATCAGATCATTCAAGTGTGACAAGTGTTCTTATATGGCAAAAAGCAAATTTGAGCTCACACGACATCAGATAGTCCATACGGATGTGAGACCATTCGAGTGTGACAAATGTCCGTACAAGGCAAAATCATTAGATCGATACAAAAGTCATCAACTTGTCCATACACAAGATAGACAATTCGAGTGTGCCAAATGTTTTTATGTGGCTAAAACAAGCTCAACTCTCAAAGAACATCAGCTTGTTCATACAGAAGAGAAGCTCTTTCTATGCGAAAAATGTTCATACCAAGCAAACAGATTACGTACTTTGAGAATCCATCTGCTGAGCCATAAGGAATAA
- Protein Sequence
- MNYDYQQVAIKSEVEDVVENSSLQRRPLNQRPNNQNWAMIMQEHNYHKIYIKSEDTWDKCSDERELHESRMGGEIINFIDVKLEPGTNQDDQNEELLFADSYKIEVDDEQYGEFYNTDARTIYSEESNTSMAKSEPSSEDSCESSDMQVQDRRSNKNTRKRQLKKNSRTFECNKCSYKAKNKIQLTRHQLTHQEGKELKCDKYSYKSDIKIDLTHHQLVHSELKLFECDKCTYKAKSNYHLLRHQYVHTQKRSFKCKQCPYTAKCKTHLKKHQAEVHTEVKQFECDKCSYKTNRKVNITQHQLVHTNVKPFECDKCNYKAKSKYQIKRHQYFHIQERSFKCDQCSYKGKTKQHLERHQAEVHTEIKKQFECDKCSYKSNRKERITQHQLVHTNVKPFECDKCAYKAKTKSQIIRHQYIHHTQQSSFECDRCSYKTKTKTQLNRHREEVHTEVKQFECDKCSYKTNRKTHITRHQLIHLPIRSFKCDKCSYMAKSKFELTRHQIVHTDVRPFECDKCPYKAKSLDRYKSHQLVHTQDRQFECAKCFYVAKTSSTLKEHQLVHTEEKLFLCEKCSYQANRLRTLRIHLLSHKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -