Casp027711.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293828.1:88485872-88494532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.75 1.1e+02 5.0 2.7 1 23 289 311 289 311 0.97 2 19 0.0062 0.95 11.6 2.1 1 23 342 364 342 364 0.97 3 19 0.0053 0.81 11.8 4.7 1 23 370 392 370 392 0.97 4 19 0.016 2.5 10.2 2.4 1 23 398 420 398 420 0.97 5 19 0.011 1.8 10.7 7.5 1 23 426 448 426 448 0.98 6 19 0.001 0.15 14.0 4.4 1 23 454 476 454 476 0.98 7 19 0.0034 0.53 12.4 2.9 1 23 482 504 482 504 0.97 8 19 0.025 3.8 9.7 7.4 1 23 510 532 510 532 0.97 9 19 0.0084 1.3 11.1 7.9 1 23 538 560 538 560 0.98 10 19 0.0034 0.53 12.4 2.9 1 23 566 588 566 588 0.97 11 19 0.042 6.4 8.9 4.3 1 23 594 616 594 616 0.99 12 19 0.061 9.4 8.4 4.7 1 23 622 644 622 644 0.98 13 19 0.021 3.2 9.9 3.1 1 23 650 672 650 672 0.97 14 19 0.021 3.2 9.9 3.1 1 23 678 700 678 700 0.97 15 19 0.00045 0.069 15.1 4.6 1 23 706 728 706 728 0.97 16 19 0.00076 0.12 14.4 2.0 1 23 734 756 734 756 0.97 17 19 0.0069 1.1 11.4 4.4 1 23 762 784 762 784 0.97 18 19 0.012 1.9 10.6 5.8 1 23 790 812 790 812 0.97 19 19 0.025 3.8 9.6 2.6 1 23 818 840 818 840 0.98
Sequence Information
- Coding Sequence
- ATGATTGTAAAGTGTGATGGTAGTAATAATATTGAGGTAGAAGAACGTACAAGTGTCAATGATAATGTTAATGCAAGTGAAAAAGGTATTATTATCAGTATCAGTGGTGGTCGTTGTAAATTAAGTAATGATACGGACACATGTGGTACCGtagttgatgatgatgttgtgAATAAAATGAGTGATGAAGGTAATAATCAATGGCAGAATCGACTTCTTGATGGTGGAAAATATGAGgATCCTAACCAGAACATGGAGAATCTTGCTATTTTGTCATCAGCTGATGAGCATCGAATGTCAATTGAGAGTCAAGTGGAGAAAGCGAACGATGATAAACAACTGTTAAGCCACGGTGAATCTGAATTAAAGTTGGAAATATTTGACGAATTTTACGAAACAGATGTGAGTTCTATTTATTTccaagaaaacaaaacaaacataataataaaagcagAACAGACTCCCGATGTCATTTTCGAAACAGGAACCTATTCTGCTATGAAAGCAGAAGAAAATGTAGATGAAGTTTCATTGCACAAATGTAATAAATGCAACATTTTAAATTGTGCATGTCTGGATGCAGATTCAATTTCATCTGCAGAAAGAAATAATCAACTTCtagtaaatatttctaaatatgaaTTGATGGTAGAGATATTTGATGAATTTTACAACGAAGATGTAagatctatttattttaaagagaGCAACACTGACATGATGAAAGCAAATAAGGCTTCCAATGCCATATCCAAATCAACAAATTCTAGgcttaaatctaaaaaaatgcaTTACACCAAAGACTCTGCTAACACAAAAACGTGCAGTGAGAACCACCAAAACGTCGATAAAGATGTTATTCTATTCAAGTGCAATAAGTGCCGCTTCAAGGCAAAGACGTCACAAGTTTTCAATGATCACCAACTACTCCATACAGAATTCAAGTCATTTAAATGTGATAAATCATCTTATAAAACAGAGAGGAAACAAAACCTCGTACAACATCATACAGTAGAGATGCCCTTCGAGTGTGATAAATGTTCTTTTAAAACGAGGTTCAATGAAAGTCTCAAAAAGCATCAAGTTATTCATTCAGAAGTGAGGCCATTCGAATGtgataaatgtacctacaaaacaaaacacaaacGCTCTCTTAAACAACATCAAGTAATTCATTCAGAAGTGAGGCCATTCAAGTGTGATAAATGTTCTTTCAAAACGAAGCTCAATCAAGATCTCAGAAAACATCAAGTTATTCATTCAGAATTGAGGCCATTCGAGTGTGATAAATGTACCTTTAAAACAAAGCACAAACACTATCTTAAACGACATCAAATAATTCATTCAGAAGTGAGGCAATTCAAGTGTGATAAGTGTACCTACAAAACAAAGCACAAAAGCGGTCTTGAACAACATCAAGTAACTCATTTAGAAGTGAGGCCATTCAAGTGTGATAAATGTTCTTTTAAAACGAGGTTCAATGTCAATCTCAAAAAACATCAAGTAATTCATTCAGATGTGAGGCCATTCGAGTGCGATAAATGTACCTTTAAAACAAAGCACAAACACTATCTTAAACGACATCAAGTAATACATTCAGAAGTGAGGCAATTCAAGTGTGATAAATGTGACTACAAAACAAAGCACAAACTCTATCTTAAACATCATCAACAAATTCATTCAGAAGTGAGGCCATTCAAGTGTGATAAATGTTCTTTTAAAACGAGGTTCAATGTTAATCTCAAAAAACATCAAGTAATTCATTCAGAAGTGAGGCCATTCAAGTGTGGTATGTGTTCCTAcagctcaaagtgcaaagacAATCTCAGATTACATCGACGAATCCATTCACAAGCAAGGCCATTCAAATGTGGTAAATGTTGTTACACGACAAAAAGTCAACAAATGCTTAAACGACATCAAATAGTCCATACAAAAGTGACGACATTCAAGTGTGATAAATGTTCTTTTAAAACGAGGTTCAATCAAAGTCTCAGAAATCATCAAGTTATTCATTCAGAAGTGAGGCCATTCAAGTGTGATAAATGTTCTTTTAAAACGAGGTTCAATCAAAGTCTCAGAAATCATCAAGTTATTCATTCAGAAGTGAGGCCATTCGAGTGtgataaatgtacctacaaaacAAAGCGAAAAAGCCATCTTAAAGAACATCAAGTAATGCATTCAGAAGTGAGGCCATTCAAGTGTGATATATGTTCCTTCAGTTCAAAGAGGAAAGTAGATTTCAAAAAACATCAAGTTATTCATTCAGACGTGAGGCCATTCGAGTGTGATAAATGTGAATACAAAACAAAGTACAAAAGCTGTCTTAAACAACATCAAGTAATTCATTCACAAGTGAGGCAATTCAAGTGtgataaatgtacctacaaaacAAAGTACCAACACTATCTTAAACAACATCAAGTTATTCATTCAGAAGTAAGGCCATTCAAGTGTGTTAAATGTTCGTACACAACAAAAAGTAAACAAATTCTCAAACGACATCAACTGATCCATACATGA
- Protein Sequence
- MIVKCDGSNNIEVEERTSVNDNVNASEKGIIISISGGRCKLSNDTDTCGTVVDDDVVNKMSDEGNNQWQNRLLDGGKYEDPNQNMENLAILSSADEHRMSIESQVEKANDDKQLLSHGESELKLEIFDEFYETDVSSIYFQENKTNIIIKAEQTPDVIFETGTYSAMKAEENVDEVSLHKCNKCNILNCACLDADSISSAERNNQLLVNISKYELMVEIFDEFYNEDVRSIYFKESNTDMMKANKASNAISKSTNSRLKSKKMHYTKDSANTKTCSENHQNVDKDVILFKCNKCRFKAKTSQVFNDHQLLHTEFKSFKCDKSSYKTERKQNLVQHHTVEMPFECDKCSFKTRFNESLKKHQVIHSEVRPFECDKCTYKTKHKRSLKQHQVIHSEVRPFKCDKCSFKTKLNQDLRKHQVIHSELRPFECDKCTFKTKHKHYLKRHQIIHSEVRQFKCDKCTYKTKHKSGLEQHQVTHLEVRPFKCDKCSFKTRFNVNLKKHQVIHSDVRPFECDKCTFKTKHKHYLKRHQVIHSEVRQFKCDKCDYKTKHKLYLKHHQQIHSEVRPFKCDKCSFKTRFNVNLKKHQVIHSEVRPFKCGMCSYSSKCKDNLRLHRRIHSQARPFKCGKCCYTTKSQQMLKRHQIVHTKVTTFKCDKCSFKTRFNQSLRNHQVIHSEVRPFKCDKCSFKTRFNQSLRNHQVIHSEVRPFECDKCTYKTKRKSHLKEHQVMHSEVRPFKCDICSFSSKRKVDFKKHQVIHSDVRPFECDKCEYKTKYKSCLKQHQVIHSQVRQFKCDKCTYKTKYQHYLKQHQVIHSEVRPFKCVKCSYTTKSKQILKRHQLIHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -