Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293828.1:88502130-88504196[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.59 91 5.3 2.7 1 23 205 227 205 227 0.97

2 16 0.0026 0.4 12.7 7.0 1 23 261 283 261 283 0.99

3 16 0.003 0.46 12.5 2.0 1 23 289 311 289 311 0.97

4 16 0.00011 0.017 17.1 4.6 1 23 317 339 317 339 0.97

5 16 0.25 39 6.5 2.6 1 23 345 367 345 367 0.96

6 16 0.0024 0.37 12.9 5.1 1 23 373 395 373 395 0.98

7 16 4.4e-05 0.0067 18.3 3.3 1 23 401 423 401 423 0.97

8 16 0.049 7.6 8.7 9.7 1 23 429 451 429 451 0.97

9 16 0.1 15 7.8 2.3 1 23 457 479 457 479 0.96

10 16 0.00035 0.054 15.5 4.9 1 23 485 507 485 507 0.98

11 16 6.2e-05 0.0096 17.8 5.0 1 23 513 535 513 535 0.97

12 16 0.049 7.6 8.7 9.7 1 23 541 563 541 563 0.97

13 16 0.0012 0.18 13.8 2.0 1 23 569 591 569 591 0.99

14 16 0.0027 0.42 12.7 1.4 1 23 597 619 597 619 0.97

15 16 0.024 3.7 9.7 2.4 1 23 625 647 625 647 0.97

16 16 0.0021 0.32 13.1 5.6 1 23 653 675 653 675 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.59	91	5.3	2.7	1	23	205	227	205	227	0.97
2	16	0.0026	0.4	12.7	7.0	1	23	261	283	261	283	0.99
3	16	0.003	0.46	12.5	2.0	1	23	289	311	289	311	0.97
4	16	0.00011	0.017	17.1	4.6	1	23	317	339	317	339	0.97
5	16	0.25	39	6.5	2.6	1	23	345	367	345	367	0.96
6	16	0.0024	0.37	12.9	5.1	1	23	373	395	373	395	0.98
7	16	4.4e-05	0.0067	18.3	3.3	1	23	401	423	401	423	0.97
8	16	0.049	7.6	8.7	9.7	1	23	429	451	429	451	0.97
9	16	0.1	15	7.8	2.3	1	23	457	479	457	479	0.96
10	16	0.00035	0.054	15.5	4.9	1	23	485	507	485	507	0.98
11	16	6.2e-05	0.0096	17.8	5.0	1	23	513	535	513	535	0.97
12	16	0.049	7.6	8.7	9.7	1	23	541	563	541	563	0.97
13	16	0.0012	0.18	13.8	2.0	1	23	569	591	569	591	0.99
14	16	0.0027	0.42	12.7	1.4	1	23	597	619	597	619	0.97
15	16	0.024	3.7	9.7	2.4	1	23	625	647	625	647	0.97
16	16	0.0021	0.32	13.1	5.6	1	23	653	675	653	675	0.98

Sequence Information

Coding Sequence: ATGGAGAATCTTGCTGTTTTGTCATCAGCTGATGAGCATCGAATGTCATTTGAAAGTCAACTGGAGAAAGCGAGCGATGATAATCAACAACTGTTAAGCCACGGTGAATCTGAATTAAAGTTGGAAATATTTGACGAATTTTACGAAACAGATGTGagttctatttattttcaagaaaacaaaacaagCATAATAAAATCTGAAAAGACTCCCGATGTCATTTTCGAAACAGGAACAAATTCTGCTATGAAAGCAGAAGAAAATGTAGATGAAATTTCATTGCACAAATGTGATAAATGCAACATTTTAAATTGTGCATGTCTAGATGCAGATTCAATTTCATCTGCAGAAAGAAATAATCAACTTCtagtaaatatttctaaatatgaaTTGATGGTAGAGATATTTGATGAATTTTACAACGAAGATGTAagatctatttattttaaagagaGCAACACTGACATGATGAAAGCAAATAAGGCTTCCAATGCCATATCCAAATCAACAAATTCTAGGCTTAAATCTAAAAAAACGCAACACACCAAAGACTCTGCTAACACAAAAACGTGTAGTGAGAACCACCAAAACGTCGATAAAGATGTTATTCCTTTCAAGTGCAATAAGTGTCGCTTCAAGGCAAAGACGTCACAAGTTTTCAATGATCACCAACTACTCCATACAGaatttaattcatttaaatgTGATAAATCATCTTATAAAACAGAGAGGAAACAAAACctcaaacaaaataaactaattcATACAGTAGATATGCCATTCAAGTGTGATAAATGTTCTTTTAAAACGAAGCGCAATGATTGTCTCAAAAAGCatcaaaaaattcattcaaaagTGAGGCCATTCAAGTGCGACGAATGTTCATTTAAAACGAGGCTCAATCAAAATCTCAAAAAACATCAAGTAATTCATTCAGAAATGAGGCCATTCAAGTGTGATAAATGTAACTACAAAACAAAGCACAAAAGCGCTCTTAAACGACATCAAGTAATTCATTCAGAAGTGAGGCCATTCAAGTGTGATGAATGTTCTTTTAAAACGAGTTACaaaaacattctcaaaaaaCATCAAGTTAATCATTCAGAAGTGAGGCTATTCAAGTGTGATAACTGTACCTACAAAACAAAGCACAAATACTATCTCAAAGAACATCAAATAGTTCATTCAGAAGTGGGTCAATTCAAGTGTGATAAATGTGACTACAAAACAAAGTACAAAAGCAGTCTTAAACGACATCAAGTAATTCATGCAGAAGTGACGCCATTCAAGTGTGATGAATGTACTTACAAAACAAAGCACAAACACTGTCTCAAAAAACATCAAGTAATTCATTCAGAAGTGAGGCCATTCAAGTGTGATGAATGTTCTTTTACAACGAGTTACaaaaacattctcaaaaaaCATCAAGTTAATCATTCAGAAGTGAGGCTATTCAAGTGTGATAAATGTGACTACAAAACAAAGCACAAATACTATCTCAAAGAACATCAAATAGTTCATTCAGAAGTGGGTCAATTCAAGTGTGATAAATGTGACTACAAAACAAAGCACAAAAGCAGTCTTAAACGACATCAAGTAATTCATTCAGAAGTGACGCCATTCAAGTGTGATGAATGTACTTACAAAACAAAGCACAAACACTGTCTCAAAAAACATCAAGTAATTCATTCAGAAGTGAGGCCATTCAAGTGTGATATATGTTCCTTCAGTTCAAAGAGGAAAGAAGATGTCAAGTTACATCGACAAACGCATTCACAAGACACGCCATTCAAGTGTGATAAATGTTCTTTTGAAACGAAGCTCAATGGCAATCTCAAAAAACATCAAGTTATTCATTCACAAGTGAGGTCATTCAAGTGTGACAAATGTTCTTTTACAACGTGGCGGAATTACAGTCTCAAAAAACATCAAGTTATTCATTCAGACGAGAGGCCATTCAAGTGtgataaatgtacctacaaaacAAAGCATAAAtactacctcaaagaacatcaAATAGTTCATTCAGAAGTGAGGAAATTCAAGTTCTTGAACGACATCAACTAG
Protein Sequence: MENLAVLSSADEHRMSFESQLEKASDDNQQLLSHGESELKLEIFDEFYETDVSSIYFQENKTSIIKSEKTPDVIFETGTNSAMKAEENVDEISLHKCDKCNILNCACLDADSISSAERNNQLLVNISKYELMVEIFDEFYNEDVRSIYFKESNTDMMKANKASNAISKSTNSRLKSKKTQHTKDSANTKTCSENHQNVDKDVIPFKCNKCRFKAKTSQVFNDHQLLHTEFNSFKCDKSSYKTERKQNLKQNKLIHTVDMPFKCDKCSFKTKRNDCLKKHQKIHSKVRPFKCDECSFKTRLNQNLKKHQVIHSEMRPFKCDKCNYKTKHKSALKRHQVIHSEVRPFKCDECSFKTSYKNILKKHQVNHSEVRLFKCDNCTYKTKHKYYLKEHQIVHSEVGQFKCDKCDYKTKYKSSLKRHQVIHAEVTPFKCDECTYKTKHKHCLKKHQVIHSEVRPFKCDECSFTTSYKNILKKHQVNHSEVRLFKCDKCDYKTKHKYYLKEHQIVHSEVGQFKCDKCDYKTKHKSSLKRHQVIHSEVTPFKCDECTYKTKHKHCLKKHQVIHSEVRPFKCDICSFSSKRKEDVKLHRQTHSQDTPFKCDKCSFETKLNGNLKKHQVIHSQVRSFKCDKCSFTTWRNYSLKKHQVIHSDERPFKCDKCTYKTKHKYYLKEHQIVHSEVRKFKFLNDIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -