Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293828.1:89482340-89483806[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00087 0.13 14.2 0.6 2 23 118 140 117 140 0.95

2 12 0.011 1.7 10.7 0.6 2 23 147 168 146 168 0.97

3 12 0.006 0.92 11.6 2.0 2 23 175 197 174 197 0.92

4 12 9.5e-05 0.015 17.3 5.5 1 23 203 225 203 225 0.98

5 12 0.01 1.6 10.9 6.1 1 23 231 253 231 253 0.98

6 12 0.00025 0.038 16.0 1.7 1 23 262 284 262 284 0.99

7 12 0.0011 0.18 13.9 0.6 3 23 295 315 295 315 0.97

8 12 0.022 3.5 9.8 2.4 1 23 320 342 320 342 0.91

9 12 0.00043 0.066 15.2 2.8 1 23 351 373 351 373 0.99

10 12 0.058 9 8.5 1.2 1 23 391 413 391 413 0.95

11 12 0.00095 0.15 14.1 1.3 1 23 418 440 418 440 0.97

12 12 0.00027 0.041 15.9 5.8 1 23 449 471 449 471 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00087	0.13	14.2	0.6	2	23	118	140	117	140	0.95
2	12	0.011	1.7	10.7	0.6	2	23	147	168	146	168	0.97
3	12	0.006	0.92	11.6	2.0	2	23	175	197	174	197	0.92
4	12	9.5e-05	0.015	17.3	5.5	1	23	203	225	203	225	0.98
5	12	0.01	1.6	10.9	6.1	1	23	231	253	231	253	0.98
6	12	0.00025	0.038	16.0	1.7	1	23	262	284	262	284	0.99
7	12	0.0011	0.18	13.9	0.6	3	23	295	315	295	315	0.97
8	12	0.022	3.5	9.8	2.4	1	23	320	342	320	342	0.91
9	12	0.00043	0.066	15.2	2.8	1	23	351	373	351	373	0.99
10	12	0.058	9	8.5	1.2	1	23	391	413	391	413	0.95
11	12	0.00095	0.15	14.1	1.3	1	23	418	440	418	440	0.97
12	12	0.00027	0.041	15.9	5.8	1	23	449	471	449	471	0.99

Sequence Information

Coding Sequence: ATGGAGGACCATTCAACAGATGGTGATTACACTGAGAGAACCATTAAGACAGAAGAGGAGGAAGCTGAGGAAAAGTACAATCCTTatgagaaattaattttatcgGCGCCGAAAGAAGAAaccgaaataaatataattaatatcaaaCTCGAACCTGAGATGAAGCAAGAAGATGAGATGGATTTGGAGACTCATGATGAATTCTACAATACAGAGgcaaagtatatttttttcgaagaaTCCAAACAAAATATTGAAGTAACAGAGAGAACAGGCAATGACAGATTAAAATCTGGAACTGGAACAAACTCTACTGAGCATACAAAAAGCTCATCTAATAGAAAATTACTTAGATGCAATGAATGTGATTTCGTTACATCTTATAGAATTTCGTTAAAAAATCACCAAATTGTAAAACATACAGATGTGAAGCCATTAAAATGTGATAAATGTGATTACACCGCTAAACTTGGAAGCCTTCTGAAACAACATCAAATAAAACACAGAGAAGAGAAATCACTTAGATGCGATGAATGTGATTTCGTTACATTTTATAAACATTCGTTAAACAAGCACCAAATAGCCAAACACACTGAACTAAGACCATTTAAGTGTGACAAATGCGATTACACCTCAAAGAATAAAACACATCTTAAAGAACATCAACTAAAACACACAGAAACAAGGCCATTCAAGTGTGATAAATGCGATCACACGACCTACtacgaatataatttttcaagaCACAAACTCACCCATGTCGATCCTGGCGAAATGGAAACATATAAATGTGATTTATGTGATTATGAATCGATAAATAAACGTTATCTCAAGCAACATCAATTAAGACACAAAAGTAAGTCAGAAGTAAAGACTCACGGCTGCACAAAATGTAATTATGTTACTAAATACAGGGCAAATCTGAAGTTACATATTTTAGCACATGTTGATCCAACTTTTCTATGTGATCAATGCGATTTTAAGGGAAAAACATTAGCACATCTCAAGAGACATCAGGTGTTTCATGAGGATTTATCTGAATTGGAAACGTACCAGTGTTATTTGTGCAGTTATATAACAAAAGATAAGAGTTATATGAAGCTGCACATGAAGACTCATACTGAAAAGTGTGTcagtgaaaattttaaatatgacaatCAAATGGAAACATACACATGTATCCTGTGTGATTATGTTACAAAGTATAGAGCATATCTGAAGGATCATTTTTCAACACATCTTGATCCAATGTTTCCATGTGATAGGTGCGATTATAAGGGGAAAACtttgaaatatctcaagaaaCATCAGCTGATCCATAAGGATATTTCTGAATTGGAGACTTTCCAATGTTATTTATGTAATTATGTATCGAAACATAAGAGATATTTGCAGCAACACATGAAAACTCACACAGGAAAATGTAGCAATAGTGAGAATGTGAAATATGACAATGAAAGTACATAA
Protein Sequence: MEDHSTDGDYTERTIKTEEEEAEEKYNPYEKLILSAPKEETEINIINIKLEPEMKQEDEMDLETHDEFYNTEAKYIFFEESKQNIEVTERTGNDRLKSGTGTNSTEHTKSSSNRKLLRCNECDFVTSYRISLKNHQIVKHTDVKPLKCDKCDYTAKLGSLLKQHQIKHREEKSLRCDECDFVTFYKHSLNKHQIAKHTELRPFKCDKCDYTSKNKTHLKEHQLKHTETRPFKCDKCDHTTYYEYNFSRHKLTHVDPGEMETYKCDLCDYESINKRYLKQHQLRHKSKSEVKTHGCTKCNYVTKYRANLKLHILAHVDPTFLCDQCDFKGKTLAHLKRHQVFHEDLSELETYQCYLCSYITKDKSYMKLHMKTHTEKCVSENFKYDNQMETYTCILCDYVTKYRAYLKDHFSTHLDPMFPCDRCDYKGKTLKYLKKHQLIHKDISELETFQCYLCNYVSKHKRYLQQHMKTHTGKCSNSENVKYDNEST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -