Basic Information

Insect: Crioceris asparagi
Gene Symbol: Rreb1
Assembly: GCA_958507055.1
Location: OY293829.1:16998546-17004452[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00035 0.054 15.5 1.3 1 23 76 98 76 98 0.96

2 16 0.00018 0.028 16.4 0.3 1 23 111 133 111 133 0.98

3 16 7.5e-05 0.011 17.6 6.4 1 23 139 161 139 161 0.98

4 16 1.3 2e+02 4.2 0.0 1 23 229 253 229 253 0.84

5 16 1.6 2.5e+02 3.9 1.2 2 23 259 281 259 281 0.90

6 16 0.83 1.3e+02 4.9 0.7 1 19 329 347 329 350 0.90

7 16 0.09 14 7.9 0.1 1 23 482 504 482 504 0.96

8 16 1.8e-05 0.0028 19.5 0.8 1 23 513 535 513 535 0.99

9 16 0.001 0.16 14.0 3.1 1 23 541 564 541 564 0.97

10 16 0.00061 0.095 14.7 3.0 1 23 980 1003 980 1003 0.97

11 16 0.00062 0.095 14.7 0.4 2 23 1231 1252 1230 1252 0.97

12 16 0.16 24 7.1 6.3 1 23 1258 1281 1258 1281 0.97

13 16 0.074 11 8.2 1.7 1 23 1313 1337 1313 1337 0.94

14 16 0.082 13 8.0 1.0 1 23 1392 1415 1392 1415 0.96

15 16 0.055 8.5 8.6 1.9 3 23 1463 1483 1461 1483 0.92

16 16 0.0039 0.6 12.2 5.1 1 23 1489 1511 1489 1511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00035	0.054	15.5	1.3	1	23	76	98	76	98	0.96
2	16	0.00018	0.028	16.4	0.3	1	23	111	133	111	133	0.98
3	16	7.5e-05	0.011	17.6	6.4	1	23	139	161	139	161	0.98
4	16	1.3	2e+02	4.2	0.0	1	23	229	253	229	253	0.84
5	16	1.6	2.5e+02	3.9	1.2	2	23	259	281	259	281	0.90
6	16	0.83	1.3e+02	4.9	0.7	1	19	329	347	329	350	0.90
7	16	0.09	14	7.9	0.1	1	23	482	504	482	504	0.96
8	16	1.8e-05	0.0028	19.5	0.8	1	23	513	535	513	535	0.99
9	16	0.001	0.16	14.0	3.1	1	23	541	564	541	564	0.97
10	16	0.00061	0.095	14.7	3.0	1	23	980	1003	980	1003	0.97
11	16	0.00062	0.095	14.7	0.4	2	23	1231	1252	1230	1252	0.97
12	16	0.16	24	7.1	6.3	1	23	1258	1281	1258	1281	0.97
13	16	0.074	11	8.2	1.7	1	23	1313	1337	1313	1337	0.94
14	16	0.082	13	8.0	1.0	1	23	1392	1415	1392	1415	0.96
15	16	0.055	8.5	8.6	1.9	3	23	1463	1483	1461	1483	0.92
16	16	0.0039	0.6	12.2	5.1	1	23	1489	1511	1489	1511	0.98

Sequence Information

Coding Sequence: ATGGAAGCATCGCCTTCCCCAAACTCCCAccaaattatcagcaccaacaCGACCACCAAAGACGACGCTCTAGCAGCCCTGTGCAACCGCAGTGATTCCGGCATTTTTTCAGCCACCAATAACACCACAATTAGCGAAGACATCTCcaacaacaaaacaacaaaCTCCTCATCGTCGACGTCAGACACTGACAATCGCAGCGATTGCTCATCACCGGAACGTAAATACCTCTGCCCCATTTGTGACAAGATGATGACGTCACAACACGATTTTACATTACACATTCGCTCGCACAATAACGAGAATGAGATCCATGACACCGACAAGGGTTACACGTGCAGAATATGCTCCAAGGTGTTAAGCTCGAGCAGTAGCTTGGACAGGCATGTCTTGGTGCATAGTGGTGAGCGTCCGTTTCATTGTAAATACTGCGGTGATACCTTCACAACCAATGGTAACATGCATCGACATATGCGGACACATTCAGCTAAATCAGAGAACAGTTATGAATCTGATGCTAGCACCGATAGTGGAAGCTCCAAGAGCACTGAATACAACAACAACAGAATAGATAAGGCAGTGATTATGACAAATAATAAGCGTAAAAATCAAGAATATGTGGATGAAGAACCCACCAAGAAGCTCAGAGAGAGCTACGAAGACCACCGGGATATTGACCAATCATACAAGTGCCCAGTTTGTGAACGCGAAGACTTTGACTCTGCCGATGTGCTCGAAACACACTTGGAAGACAATCATCCCGAGTATCCGGCCAAGTGTAACCAATGCAGACATGTTTTCCTCAATAACAAACTACTGCTTGCACATAAAGAGGCTATACACGAAAGTAACAACGCAACCAAACATCCAGTGGTTGGTTTCAAGGATCTCACTTTCGTGGACTTCTCCAGCCAAAAGTTTCCACTGATTGCACGCAGAGAATGCGAAATGAATCTACATAAAGTCTCGACTGGTAGTTTAAAGTTCCAATGTAGAAAATGCTCGAGAGCTTTCCCATGCTCGAATTCGCTCGAAATTCATGAAGCTAGCTGTGAACCAACTGAGAACGCCAACGGCTTGGATTTATCCACCATCTCTCAACCTGAAATAAGGCGCATGGAATTTTTCTCAAGGCTCAACTTGGTCGACAACTCACCTGAAAAGCTATCTCCACCTCCTCATACACCAATAATTCCATCTAACAAGCTGCGGGAACAGCTCGCCAAAGCCATGGACAATACTAAAGATCTTGCTGATATACAATCAATCTTGTCTAATATCAACTTGCAACAGCTGCAGGCAAAACACCAAGGAGTTATCTCATTGCCATCAGTCCCGAAGCAACCTCACCTCGAACAATCACTCGAATTTCAAAAGAATGAGGAGGAAGAATCTCAAGATTTGTTTGCTGTTGAATTTAGGAAAATGAAGCTGCGTGGCGAGTTTCCGTGCAGATTATGTACGGCAGTCTTTCCCAATCTCAGAGCTCTCAAAGGTCACAATAGAGCCCATCTAAATGGTAACAATAATGGAACTTACTACTGCAACATGTGTCCACACTCTTCAATCGATAAAGCTGCTCTTATACGTCATATGCGTACTCACAATGGCGATCGACCGTACGAATGTTCATTGTGCAATTACGCATTCACAACAAAGGCAAATTGCGAACGACACCTGCGCAATCGCCACGCCAAAACTACCAGGGAAGAAGTGAAAAAGTCTATAATTTACCATCCTTCCGAAGATCCAACCAATGAAGATCTGAACAAGCTCTCCGTGACCAAAGATGAGCCCTCCAGAAAGCTCAACTCATCTTGTTCAACTGACGCCAGCGACTTGAGTCCCGAGAAGGTACATTGCTCAACGCCAAAACTGTCAGATATGATGCGTACCAGCATGAGTGAAATTaaaatggaaattttgaaaCCAACAATCCCAAATGTTCCCGATCTCCAAGCCCTTAAACCTACTAAAATGTTTTCCGACATCATTCGGCAAGAAAATTTGCGGTCATTAAAAGAACAAAAATTCCTGCAGAATGGCACAACCACTTCAACACCCATGTTTCCACATACTTTTAATATGACACTGCCCCAAAATATGTCATCTAAGATACAAGTTAAGAATATTGATGTACTTAGAGATAACATTAATAGTATTCCATATGATGACGAATCAGAAGATGACTACATTGAAGAGGAGGAGGAAGATCAACCCTTGGACTTGGTACTGGATCTGAGTAAGAAGAAGAATGTTTCCGATGACGAAATAAAGCCTGAAGAAGACGAAGTGCCACAAGATTTGACGAAGAAATCCCCTCCTCCTGTTGACAACACCCACATTACGTCTCAATTGCCAGCTAACATGGGCCAACTATTTGCTCAACATTTACTTAAATCTCCTCCGAAAATAGATCCTGCAGCTCTGTATGCTCAACTAGCTCTATATCGTAGCGGTTTTCCAAACTTAACCAACTGGACTGGTTTTCCCTTAAACCCTTTGCTATTCCCGTCGCTTCCTCCAACTATGGTCCAAAGTACTCCGGACATAAAGGAGAGGATGCAAAGATTCCAATTATGTGGTGGATCTATGATTTCCGATGATTTCAAAAAGCTGCACAACTTACAGCAACAGTCACTGCTTAGTCCAAATGCAGCAGTTGGCTACAATGGTTTGAAAGTTGACGtgtcaaatcaagaaaaggtaAGAATGGAAAACCATTTCTCCACACCAAAGAAAACAATCAACATGAAACCGCTCAGCCTCAACATAGAGAGCAATAATTTAAATGAGCACGTCAAGGTACAAAGTCCTATTATACCACAAATAACTAAACCTGAGATGATGCAGTCACCAAATTCAGTCAAAATGGTGATCAAGAATGGTGTTTTGATGCCGAAACAAAAACAGCGTAGATACAGAACTGAAAGACCCTTTACGTGTGAACATTGCTCGGCTAGATTTACTTTGAGATCGAACATGGAACGCCACATCAAGCAGCAGCACCCACAATTCTGGTCGCAGAGACAGCGTGGAAGCGTTGGTAATCCTGGCAGGAAATCACAGCAAAGTATTCCCCTTAAACCAAACTACTGCGATCTGAGCATTCCAAACTATGAACCACCAAAGAACCATGAATTCAACGACGCCAAAGACTTCCTCAATGAGAAGCTCAAATACGCATTGCTCGCACAACAGCTGAGAACGAATCACAATCTACAGCAAAGCTACAAGCACGAACAtaacgatgatgatgatgaagaagaagacgaagaagaagaTTGTGAATTGATCATTGATGAAAATGATGACAACAAGAGTGATAGAAAGACTGATGACAACAACGAccaaagaaatattgataatgtaTATGAATGCGAAGATAAGAAACCGGCAGCAGTTGAGATGGAAAGCAAGAGTGTAAAAACAGAAGAGGGTAGTCAGGATTTAGTGCCTGTATCTCGGTTGCTTGATAATGCCTCACAACAGCAGTTCAAGGAGTATTTTAAGCGTGAAGGTGAGGAGCATGAGGTTGGTTTGGTCAGTGAAGAAGATGAAGAAGGTTTGGTGGCCAGTGGCAGCACGAGTGAGGGCAATGTGTCTGGCACTGACGAAAACAGGTCTGAGTCTGAAACAGCGCAACCAGTCAAAAAGAAATCAGCTTATTCCCTAGCACCAAACCGAGTCAGTTGCCCGTACTGCAGTCGAAAATTCCCATGGACGTCATCACTGAGACGCCATATACTTACTCACACTGGTCAGAAACCATTCAAGTGCAGCCATTGTCCATTATTGTTCACCACAAAATCCAACTGTGACAGACATTTGCTGAGGAAGCACGGCAACTCGGCCACAACTATCTCCAACGAATCTAGCCagaacaacaataacaacagcaACAATTATCTGATGCGTAACGTGCCCGAACGACCATTCAAGTGCTCATCTTGCCCCAGCAGTACCTTCTCCACCTATCCCAACCTAAAGAAGCACATTAGTAGTAAACACTCAAGCAACGCGCAAGGGGATGACATAAAAGCACAAGGCTATGAAGCTGGGAGCTCTGAAGATGAAAAAATGACCAATTGCGATGCAAAAAGTGATTGGGAATCGCAACTGGCATTCAATAAGCTACCATGTGATACTATTGTGGCCAATTCCGATCTACCTTTCAAGTGTCATTTGTGTGAGGGCTCGTTCAGCGAACGACAAGATGCGTTGGATCATATACGCGAGAAGCACGTGTCAGAGTATGAGCTGCTGATGTCAAAGAACGCGCTAGATCCACATGCCAGCACGCCTGATGAATCGGCGCCACATCAAGACGATGACGAGACCGAAATCAGAGGCAAATTTCCGGACTATAGCAACCGCAAGGTATGTTGCGCGTTCTGTATGCGCCGCTTCTGGTCGGCAGAGGATCTACGCCGGCATATGCGCACTCACACTGGCGAGCGACCATTCAGCTGCGACATCTGCAGGCGGCGCTTCACCCTCAAGCACAGCATGCTGCGACATCTCAAAAAGCACAACATTGAATTCACCAATGAAGCTGGAAATAATAGTGACGAGGAGATTGATGTTAAATATTCCAAAGGTAATACAGGTGCACTGAAAACCAACGATTCTGATGCTACTGAAGGCACTGGAAGTGGTGGGGATCTCATCACCGACATGCTAGGTTTGGGAGACTCATCAATAATTGAAAGGATTATTACGGGTTCGGCAGACGATGCTGCCAAAATGTTGGGAGTGAAAACGAATGGGAAAGAATGA
Protein Sequence: MEASPSPNSHQIISTNTTTKDDALAALCNRSDSGIFSATNNTTISEDISNNKTTNSSSSTSDTDNRSDCSSPERKYLCPICDKMMTSQHDFTLHIRSHNNENEIHDTDKGYTCRICSKVLSSSSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSAKSENSYESDASTDSGSSKSTEYNNNRIDKAVIMTNNKRKNQEYVDEEPTKKLRESYEDHRDIDQSYKCPVCEREDFDSADVLETHLEDNHPEYPAKCNQCRHVFLNNKLLLAHKEAIHESNNATKHPVVGFKDLTFVDFSSQKFPLIARRECEMNLHKVSTGSLKFQCRKCSRAFPCSNSLEIHEASCEPTENANGLDLSTISQPEIRRMEFFSRLNLVDNSPEKLSPPPHTPIIPSNKLREQLAKAMDNTKDLADIQSILSNINLQQLQAKHQGVISLPSVPKQPHLEQSLEFQKNEEEESQDLFAVEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNNNGTYYCNMCPHSSIDKAALIRHMRTHNGDRPYECSLCNYAFTTKANCERHLRNRHAKTTREEVKKSIIYHPSEDPTNEDLNKLSVTKDEPSRKLNSSCSTDASDLSPEKVHCSTPKLSDMMRTSMSEIKMEILKPTIPNVPDLQALKPTKMFSDIIRQENLRSLKEQKFLQNGTTTSTPMFPHTFNMTLPQNMSSKIQVKNIDVLRDNINSIPYDDESEDDYIEEEEEDQPLDLVLDLSKKKNVSDDEIKPEEDEVPQDLTKKSPPPVDNTHITSQLPANMGQLFAQHLLKSPPKIDPAALYAQLALYRSGFPNLTNWTGFPLNPLLFPSLPPTMVQSTPDIKERMQRFQLCGGSMISDDFKKLHNLQQQSLLSPNAAVGYNGLKVDVSNQEKVRMENHFSTPKKTINMKPLSLNIESNNLNEHVKVQSPIIPQITKPEMMQSPNSVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQFWSQRQRGSVGNPGRKSQQSIPLKPNYCDLSIPNYEPPKNHEFNDAKDFLNEKLKYALLAQQLRTNHNLQQSYKHEHNDDDDEEEDEEEDCELIIDENDDNKSDRKTDDNNDQRNIDNVYECEDKKPAAVEMESKSVKTEEGSQDLVPVSRLLDNASQQQFKEYFKREGEEHEVGLVSEEDEEGLVASGSTSEGNVSGTDENRSESETAQPVKKKSAYSLAPNRVSCPYCSRKFPWTSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNSATTISNESSQNNNNNSNNYLMRNVPERPFKCSSCPSSTFSTYPNLKKHISSKHSSNAQGDDIKAQGYEAGSSEDEKMTNCDAKSDWESQLAFNKLPCDTIVANSDLPFKCHLCEGSFSERQDALDHIREKHVSEYELLMSKNALDPHASTPDESAPHQDDDETEIRGKFPDYSNRKVCCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHLKKHNIEFTNEAGNNSDEEIDVKYSKGNTGALKTNDSDATEGTGSGGDLITDMLGLGDSSIIERIITGSADDAAKMLGVKTNGKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -