Casp027643.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293828.1:86786711-86791302[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.69 1.1e+02 5.1 0.6 2 23 48 69 47 69 0.94 2 21 1 1.6e+02 4.6 5.8 1 23 74 96 74 96 0.98 3 21 0.94 1.4e+02 4.7 9.1 1 23 99 121 99 121 0.98 4 21 0.086 13 8.0 2.2 2 23 156 178 156 178 0.90 5 21 0.0022 0.34 13.0 0.3 2 23 188 209 187 209 0.97 6 21 5.6e-06 0.00086 21.1 0.8 1 23 215 237 215 237 0.97 7 21 0.035 5.4 9.2 4.9 1 23 243 265 243 265 0.98 8 21 0.0022 0.34 13.0 0.1 1 21 271 292 271 293 0.93 9 21 0.0096 1.5 10.9 0.5 2 23 361 382 360 382 0.93 10 21 9.9 1.5e+03 1.5 4.1 3 23 416 437 416 437 0.90 11 21 0.3 46 6.3 1.1 2 23 444 465 443 465 0.79 12 21 0.00069 0.11 14.6 0.3 2 23 474 496 473 496 0.93 13 21 0.045 6.9 8.8 0.0 2 23 509 530 508 530 0.97 14 21 3.5e-06 0.00054 21.8 0.8 1 23 536 558 536 558 0.97 15 21 1.9e-05 0.0029 19.5 5.0 1 23 564 586 564 586 0.98 16 21 0.16 25 7.1 3.4 3 23 749 770 747 770 0.95 17 21 0.039 6.1 9.0 1.2 2 23 777 798 776 798 0.93 18 21 0.16 25 7.1 1.0 2 23 807 827 806 827 0.71 19 21 3.5e-06 0.00054 21.8 0.8 1 23 833 855 833 855 0.97 20 21 2.9e-06 0.00045 22.0 2.9 1 23 861 883 861 883 0.98 21 21 9.8e-05 0.015 17.2 0.6 1 21 889 909 889 910 0.95
Sequence Information
- Coding Sequence
- ATGGAGACAACTGCAATAGAGCTGAATGAGGAAAACATACACATACCTGAAAATATCGATAATTTGGAAGAAGATGTCACCGAGGCAGAACAAAATTTTTCGGATCAAATCATCAATATCAATGTTCCAGATAAGCCACTTGTGTGTACAGAATGTTCCACTGCGTACGAATCGCACATGGAATTTGCCTTGCATTCTCAAAACCATAAAGTCATTTACTTCCAATGTCATTTGTgtgattttcgagagaaatccaaaagaaaattcaaaaagcACGTTCTCTCACATGATCGATATTTTTGCAAACTATGCAAGGTATTCTTCAAAAACAAATGCAATGCCTACAATCATCACAAAACGCATATGGAGTCTGAAAAGATAGCTTGCGATGTTTGTGGCAAACTGGTCAGAGCTGCTTACGTGGATGTGCACAAAAAGAAAGTGCATGGATCAGTGCAGATGCGTCAGTGCACCATGTGCGATAAATCCTACAAAGATATCACAGCGCTGAAATGCCACGTATCCTCACAGCACAAGGAATTAGGCCTGGACTTGTCGGTCGTATGTGATGTGTGTGGCTTGCGCTTGTCCAGCGGcactaatttaaaatatcacaAGCGAACGCACACTGGTGATAAGCCGTTCGCTTGTACCAAGTGTCCAAAAAGATTTGCCATCAACTGGAACTTTCAGAAACACATGAGGGTGCATTCTGGCGAGAAACCTTACGCATGCAAGTATTGTGAAAGAAAGTTTGGCCATTTCAGCTCATACGATTACCATTTGAAGAAACATACAGGTGAAAAGAAATTCTCCTGTCCCTTATTGTGTGGTAAAGCTTTCATCACCAACCACGCTATGAGAATGCATGCAAATATTTTGTTCTCCGACAAAGCATATGAAAAGATAGCTACAAATCATGAACCAACCCATGATAAATATACATCAATTTCAAGGCAGATACATGAGACAGAAACTTATAGACCTGAAAATACCGATAGTTTTCGAACAGTTGCCACCCAGCCAGACGCAAAATATTTGGATCACTTCATCAATCTCAATGCTCCTGAAAAGCCACTGATATGTACAATATGCTCAAAGGTGTTCGTAACTCATATGGACTTTGCTTTACACTCTCAATGGCATAACAAAAACTACATCTTCTCATGTCATCTGTGTGTTTTTCGAGATAAGTCCCGAGTTAGATTCTTCAAACACATGCAATCACATGATAATAATTACTGGTGCGAACCATGCAACATACATTTCAAAAGCAAAAACCACGCATACAGACATTACTACAGAATGCACCGAGTGTCCGAAAAGCTACCTTGTGATGTTTGTGGCAAACTATTCAGACACTCCTATATAGATATGCACAAGAAGACTATGCATCGATCTGCATCAGCCACTTTGATTCAGTGCACCCGGTGCGATAAAACCTTCAAAGCTGTCACAGCGCTGACAGCTCACATGTCTGCCAAGCACAGGGGCGAGTGCGAGTTGAGCAAGGACTTGTCAGTCGTATGCGAAGTATGTGGCGTACGTTTGAGCAACAAGGGTGCCTTAGTTTTTCACTTGCGTAGACATAATGATGATAAACAGTTTGCGTGTACCGAGTGTTCGAAAACGTTCGTCTTGAAAAGTCAGCTTAAAGAACACCTTAGAGTACATACGGGCGAAAAACCGTACGAGTGCACATACTGTGGCAAAAAGTTTGCTCATAATGCCACTTACCATCGCCATTTGAAGATACATACAGTATTCGACGATAAAGCATATCAACAGGTAGCTACAAATCATGAACCAACCCATGATAAATATACATCAATTTCAACGCAGATACATGAGACAGAAGATACAGATAATTTTCGAACAGTTACCACCCAGCCAGATGCAAAATATTTGGATCACTTCATCAATCTCAGTGCTCCTGAAAAGCCACTGGTATATCAAAAGATACATGAGACAGAAAGTTATAAACCTGAAGATACTGATAATTTTCGAACAGTTGCCACCCAGCCAGACGCAAAATATTTGGAACACTTCATCAATCTCAATGCTCCTGAAAAGCCACTGGTATGTACACTATGTTCAAGGGAGTACTTAACTCATATGGACTTTGCTTTACACTCTAAATGGCATAACGAAGACTACATATTCTCATGCCATCTGTGTGTTTATCGAGATAAGTCCCGAGTCAGATTCTTCAATCACATGCAATCACATGATGATAATTACTGGTGCAAACAGTGCCACATACAATTCACAAGCAGAACCAACGCATACAGACATTACTACAGAACGCACCGAATGTCCGAAAAGCTACCTTGTGATGTTTGTGGCAAACTATTCAGACACTCCTATATAAATGTGCACAAGAAGACTATGCATCGATCTGGAGCAGCCACTTTGATTCAGTGCACTCGGTGCAATAAAACCTTCAAAACTGGAGCCTTAGTTTTTCACTTGCGCAGACATAATAATGATAAACAGTTTGCGTGTACCGAGTGTACGAAAACGTTCGTATTGAAAAGTCAGCTGAAAGAACATCTTAGAGTGCATACGGGCGAGAAACCGTACGTGTGCACATACTGTGACAAAAAGTTTGCTCACAATGCCAGTTACAATCGCCATTTGAAGATACATACAGGTGAAAAGAGGTATAGTTGTCCATTGTGCAGTAAACGTTtcattaacaaatttaatatgaaTGCTCATTTGAATAAATGCCAGTTGTCAGCTGAATAG
- Protein Sequence
- METTAIELNEENIHIPENIDNLEEDVTEAEQNFSDQIININVPDKPLVCTECSTAYESHMEFALHSQNHKVIYFQCHLCDFREKSKRKFKKHVLSHDRYFCKLCKVFFKNKCNAYNHHKTHMESEKIACDVCGKLVRAAYVDVHKKKVHGSVQMRQCTMCDKSYKDITALKCHVSSQHKELGLDLSVVCDVCGLRLSSGTNLKYHKRTHTGDKPFACTKCPKRFAINWNFQKHMRVHSGEKPYACKYCERKFGHFSSYDYHLKKHTGEKKFSCPLLCGKAFITNHAMRMHANILFSDKAYEKIATNHEPTHDKYTSISRQIHETETYRPENTDSFRTVATQPDAKYLDHFINLNAPEKPLICTICSKVFVTHMDFALHSQWHNKNYIFSCHLCVFRDKSRVRFFKHMQSHDNNYWCEPCNIHFKSKNHAYRHYYRMHRVSEKLPCDVCGKLFRHSYIDMHKKTMHRSASATLIQCTRCDKTFKAVTALTAHMSAKHRGECELSKDLSVVCEVCGVRLSNKGALVFHLRRHNDDKQFACTECSKTFVLKSQLKEHLRVHTGEKPYECTYCGKKFAHNATYHRHLKIHTVFDDKAYQQVATNHEPTHDKYTSISTQIHETEDTDNFRTVTTQPDAKYLDHFINLSAPEKPLVYQKIHETESYKPEDTDNFRTVATQPDAKYLEHFINLNAPEKPLVCTLCSREYLTHMDFALHSKWHNEDYIFSCHLCVYRDKSRVRFFNHMQSHDDNYWCKQCHIQFTSRTNAYRHYYRTHRMSEKLPCDVCGKLFRHSYINVHKKTMHRSGAATLIQCTRCNKTFKTGALVFHLRRHNNDKQFACTECTKTFVLKSQLKEHLRVHTGEKPYVCTYCDKKFAHNASYNRHLKIHTGEKRYSCPLCSKRFINKFNMNAHLNKCQLSAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -