Basic Information

Insect: Crioceris asparagi
Gene Symbol: pita_1
Assembly: GCA_958507055.1
Location: OY293833.1:19718351-19728672[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00015 0.023 16.7 0.7 1 23 231 253 231 253 0.98

2 10 2.9e-05 0.0045 18.9 3.3 1 23 259 281 259 281 0.98

3 10 5.5e-05 0.0084 18.0 2.4 1 23 287 309 287 309 0.99

4 10 0.0046 0.71 12.0 1.3 1 23 315 337 315 337 0.97

5 10 7.5e-06 0.0012 20.7 0.2 1 23 343 365 343 365 0.96

6 10 4.5e-05 0.0069 18.3 2.0 1 23 371 393 371 393 0.98

7 10 0.0001 0.016 17.1 4.8 1 23 399 421 399 421 0.98

8 10 4.8e-05 0.0074 18.2 0.6 1 23 437 459 437 459 0.94

9 10 0.0013 0.19 13.7 0.2 2 23 465 486 464 486 0.97

10 10 3.1e-05 0.0048 18.8 0.3 1 23 492 514 492 514 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00015	0.023	16.7	0.7	1	23	231	253	231	253	0.98
2	10	2.9e-05	0.0045	18.9	3.3	1	23	259	281	259	281	0.98
3	10	5.5e-05	0.0084	18.0	2.4	1	23	287	309	287	309	0.99
4	10	0.0046	0.71	12.0	1.3	1	23	315	337	315	337	0.97
5	10	7.5e-06	0.0012	20.7	0.2	1	23	343	365	343	365	0.96
6	10	4.5e-05	0.0069	18.3	2.0	1	23	371	393	371	393	0.98
7	10	0.0001	0.016	17.1	4.8	1	23	399	421	399	421	0.98
8	10	4.8e-05	0.0074	18.2	0.6	1	23	437	459	437	459	0.94
9	10	0.0013	0.19	13.7	0.2	2	23	465	486	464	486	0.97
10	10	3.1e-05	0.0048	18.8	0.3	1	23	492	514	492	514	0.97

Sequence Information

Coding Sequence: aTGGATAACAGGGCTGAAGTGTTAAGGGATATGCAAGTTTGCCGATTTTGCTTATGCAATGAAGAATCACAATTAACCAATATATATAAACGGCTCGGTAATGATAACAGATATTCAGTGCCCCTACCATTACAGATTATGGCTTGTATTTCAATCGAGGTTTTTGAAAGCGATGGTATGCCACAACTTATTTGTAATACGTGTAGAAAGTTGACAGTGCAGGCGTACACTTTCAAAACAAACAGCAAGAAAGCTGACGATGCCTTGAAGTTGTTCCTTGCTACAGGGCAATTGGCTAAGCCCTTCATGCATCGAATTGAAGAGTTGGTCTTGTCTACATCATCATCGAAGACCAGTGCCAACAATgagaaacaaattgaaaaaaacgcATCTCCACCAAAACAGCACCAAGCAGTACAAGTATTGCCATCGAATAATGAACATGTTGACGAACGGATATCAAAAACGAAAGAGAATTGGACTATGATGGATGAGGATAGTCACGATTTTGTGAGAATCTTGGAGTTAGCCAATAATGATTCAACCGATGATCAAGACCAGGCGACACACGATGAAGACGAGAACAATGAAGAATTCAGGAGCTGTGATGACACAACAAATGATGGTAAATTGAACGAATCATCGGAATCAACTCAGAAAATAACTGTTCTTCAAGTACAAACTGATTGCTTTCCATGTACTCATTGTGATCGATCATTTCCACTGCAACAGCTACTCGATTTGCATATGGAAATGCATTCACGTGAAAGAGCCTTTGAATGTGATACATGTGATCGAAAGTTTTTCACAAAGtaTGACCTGCAGAAGCACTTTTTAACTCATGGGGAAACGAAACCATTCAAATGTATGGTgtgtttcaaaatttttagtCGGGAAACGTTGCTGAGAAGACATGAAAAAACACATGACAATGTACCCAAATATAATTGTTCTTATTGTGAGAGAACATTCCTCAACAAGGAGTTCTTAGCTCAGCATTTGGAAAAACATAGAAAGAGCAAGCCGTATGACTGCAAGATATGTGGTAAAAGTTTCGTTTTTAAACAGGGTCTAGAACGTCACGAGATCGTACATAGCCAAAATAAACCACATAAATGCAATTATTGTGAGGCTAGTTTCACGTCCGCTATAAAATTGACGAGGCACATTACGTCTCATGCTGGTTTACGTCCATACCCGTGCAAATTGTGTGGCAGGACATTCCTATTGAGTCATCACTTAACAAGACATATGCGCAGTCATTATGCATTACAAAGTTCTAATAAGTCCGTTATGATTgcaaatcaatataaatgcgaCTTATGCAGCATGTCTTTCAGGAGAAAAGATTCACTTATCAATCATAGCGTGATacattctatggtcaatttaaAGTGCGTCATTTGCTACACAAGTTTTGAGAATGCCTCTTTGGTTAAGGAACACATTACAACACATTTGGCAAGTCTTCCATATCCATGCGACAAATGCGATTATAGTTTTGAAACATCTCAACAATTGGAGGAGCACGCGTTGAAACATGCCGAAATGGAATATGAAGATCAAATTGAGAAGGAAGTTCTATCGGAGGCAATGCAACAGAATAAAAAAGAGTCGGTTTCAGATGATGATATTGTTGTACAAGGTGAAGACGGCGATGAAACTATTGTATCTATGAGTATTCAAGGATTGGACGACGATGagGTTCAAGAATTTACCATTACCGATATCGATAATCCAGATATAGTTCTGAAAGATACAAGTAGCAAACAAAAATCACTGGAACCCTTCTCCTTTTTCCTCAAAGATGAACTATCATCAAATTCAGATGACGTTGAGGATAGCAGATCCAATACAGttatgaaTTCCCAGGATTCTGACATATTGGACATTGAATCAATCAAACCGATTGTTCGACATGAAGGTACAAAAGTATATCAACGTAAAGCGCCTGGTAAAAGAGTACCATCGCGAATTAAAATAGCACCTGCAAAACTTGATGATGCTTCTGCTAAACAAGTTCAAGCATCTTATCAAATTGATAACATGGCTGAATTGAGTTCGCAAGCCTCTCAGGAAACGGATTCAAAAAAAATGAAGATTGGTGAAAAGGTCGTTCAAGTGAGGAAATTTATACTAACAAAAGATAAAATGAAGGCTATGGCTAAAGAAGgTATTTTGGAGTTGAAAGGTAATAgagtttttctgaaaaatccCGGTGCGCCGATATTGAATGCAACTCTCAAATCACTTCAGGACATCGATATTGATTCTATGTTGGATAAAAGTAAAGAATCACGACAACAAGTCAAACAGTATCAGAAGAAATCTgataaaaatgatgatgatcaaTCCAAAAACTAA
Protein Sequence: MDNRAEVLRDMQVCRFCLCNEESQLTNIYKRLGNDNRYSVPLPLQIMACISIEVFESDGMPQLICNTCRKLTVQAYTFKTNSKKADDALKLFLATGQLAKPFMHRIEELVLSTSSSKTSANNEKQIEKNASPPKQHQAVQVLPSNNEHVDERISKTKENWTMMDEDSHDFVRILELANNDSTDDQDQATHDEDENNEEFRSCDDTTNDGKLNESSESTQKITVLQVQTDCFPCTHCDRSFPLQQLLDLHMEMHSRERAFECDTCDRKFFTKYDLQKHFLTHGETKPFKCMVCFKIFSRETLLRRHEKTHDNVPKYNCSYCERTFLNKEFLAQHLEKHRKSKPYDCKICGKSFVFKQGLERHEIVHSQNKPHKCNYCEASFTSAIKLTRHITSHAGLRPYPCKLCGRTFLLSHHLTRHMRSHYALQSSNKSVMIANQYKCDLCSMSFRRKDSLINHSVIHSMVNLKCVICYTSFENASLVKEHITTHLASLPYPCDKCDYSFETSQQLEEHALKHAEMEYEDQIEKEVLSEAMQQNKKESVSDDDIVVQGEDGDETIVSMSIQGLDDDEVQEFTITDIDNPDIVLKDTSSKQKSLEPFSFFLKDELSSNSDDVEDSRSNTVMNSQDSDILDIESIKPIVRHEGTKVYQRKAPGKRVPSRIKIAPAKLDDASAKQVQASYQIDNMAELSSQASQETDSKKMKIGEKVVQVRKFILTKDKMKAMAKEGILELKGNRVFLKNPGAPILNATLKSLQDIDIDSMLDKSKESRQQVKQYQKKSDKNDDDQSKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -