Casp014096.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293827.1:1116837-1124700[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0078 1.2 11.2 3.7 2 23 168 190 168 190 0.94 2 18 0.059 9.2 8.5 0.9 1 19 341 359 341 361 0.97 3 18 4.6 7.1e+02 2.5 0.1 6 20 425 439 422 441 0.92 4 18 0.044 6.8 8.9 0.5 1 20 447 466 447 470 0.91 5 18 0.0008 0.12 14.3 0.9 2 23 560 581 559 581 0.97 6 18 0.058 8.9 8.5 0.1 1 23 604 627 604 627 0.86 7 18 0.0051 0.79 11.8 0.8 2 23 631 652 630 652 0.96 8 18 3.9 6e+02 2.7 1.8 1 23 712 735 712 735 0.95 9 18 0.1 16 7.7 0.1 2 23 749 770 748 770 0.96 10 18 6.8e-06 0.0011 20.9 6.1 1 23 802 824 802 824 0.98 11 18 0.00012 0.018 16.9 1.3 1 23 867 889 867 889 0.98 12 18 0.0014 0.22 13.6 0.3 2 23 905 927 904 927 0.93 13 18 0.0012 0.18 13.8 0.2 1 23 951 973 951 973 0.93 14 18 3 4.7e+02 3.1 0.1 1 23 1037 1060 1037 1060 0.93 15 18 0.0017 0.26 13.4 1.8 2 23 1071 1092 1071 1092 0.97 16 18 0.00021 0.033 16.2 0.2 1 23 1133 1156 1133 1156 0.97 17 18 3.5e-06 0.00054 21.8 0.6 1 23 1164 1186 1164 1186 0.99 18 18 0.011 1.6 10.8 0.4 1 23 1229 1252 1229 1252 0.95
Sequence Information
- Coding Sequence
- ATGGAAGGGTCCATTTCTTCATTGGGCAATTTCCAATCTTGTTGTAGATTGTGCCTGTCTGAGAAATTGGATGACTTGAAATCCGTTTACGATGAAGCAATAGAGGACCGTTCATTGCCGCAGAAGATTTCGCATTTTTTATCCATCGAGatAAACAATCCTGATAGACTATCAACGTTGGTATGCTCGAAGTGCGTATCAACCATCAACACATGGCAGGAATTCAAGATTCATTGTtcacaaaatcaaatcaaattggAGGAATGGTTCCATCGCAAATCGGCTTCGACGGCGATGGGCCTGCAACCGCCACTTTTGAATGGATTTGGTGATcattTACAAATTAAGACTGAACCTATGGGCGATGATGATGGTATGTCAATGCCGTTGTGGGTGAAATCCGAACCTGTGGACCATGATGCTGTAGATGCTGTCTACAATGAATTTCCACCAACACTTTCACCAACTGTACCTGAGAAACGTGACAGTCTCGAAGATCGAACATGCACTGTCTGCCACAAGGAATTTAGTTCAGCAAACAATCGTAAAAAACACGAAAAACAACTACATGGAAAAAATCAACCGATGAGAATTGAACAGTATATTCGAAAATCTATGATGGAAATCGAAACAAACACTAGCACCAATGCCGAAACAAACATCAGCACCAACGCCGAAACAACACCATCAAACGAAACCGATGGAGATGCTGCACCAGCCGAAGAACAGGCCACTACTGAAACAACAATAACAGAAGAAGCAGCAGCACCACCACCAGCTCCACCCACAGAAGCAGAACAACAAAAAATCCTCTTCGCAGCCGGCCTGAAACTGCTGCAAAAAAATGCCACCCCAATATCTTGCGAGAATCTCTCCAAGATCGAGCTGAGCTACATTGAAAAGTGCAAGGCCATGTTGTCGATGCACAAAACCCTGGAATGCGCCTGCCATAATGTCCAACATGCCAATATCAAAGGCCTGCTGTCACATTTGCGTGCTTTACGCATCTGGTTCCCAGTATTCACATGCTACAATTGCATGATCACATTCACCGATCGATCAACATTCACCAGACACAATGTCAGATGCACCAACTCACCGTTGGACACATTGACGAAATTGAGCAACTTGAAGAAACGTAGCGAAGTGAAAACGCGCCTATATCAAAACTTCAAATGCACCGCATGCTTTTTCATGTACAGCTTCCACGAGGATTTCTGCAAACACGTCGACGAAGATCATGCTGAAATTGAGATGCCTTACACGTGTTCGTGCACCAGAAGTTTTGATAATCTCGAAGACTACAAAGATCATGTGTACGTTAGCTGCATGGTCGAGTACTATTGCGACATTTGCTTCATAACCACCAAGACACTGGAGGACTTTCAAAAGCATGCAGTCGACACGCACGACAGCTCCGAGGGTTTCATTCTGCTGCAAGATGACAACTACAAAATGCGCAAACCACCGAATCTCCACTCACCCAAAGATCAGGTCGATGAGAGTGTCATCCTGACGGGAAAACGCGAACGTCGAATGTCCATCAAAGCCCCCCAACACATGGATATTGACGATGAAGAGGAAGATGACAAAGATGGCTTATTAGTGCAACCTGTTGCCCCTGTACGCTACTATGATCCAAACATCTTTGGCGGCACACCGAGATCATTCAACAAAACTTGCCCCATATGCGCCAAAGAGTATTCATCCTACAACAATATGATGCGACATTACAAATCACATCCGGAAGCTGTCATGCCAAATGGTGTTGCTGATGCCGCCACCGTTCAAGATGACGACGGCTCATTCTATTCCTGTCCTGATTGCGGTGGTGTATACAACTCCAAAGAATGGCAGGAACATCTGTCCACACCGAAACATGCACCGAAATCGTGCAGTGAATGCGACAAAATCTTCCAATTCCAAACCGAATTGGATCAACATCGCAGCGTTCATTTGAACTTGAAAGTGTATCGTGATTCCAAGACGCACGCTTTAAAAACGGCCATGATTAGCCCGACGCACGAAGATGATCAGCCAGACGATGGGATGATGCTCGATGATAATGCATCATCCATTGAAtccaatgctactgctgaaaaTGTCACTGATAATGATGACAAAAGCAAGAAATACTACTGTCAGCCCTGTGACAAGCTCTATTTCAATTATAACAGCTTGTGGGATCACAATAAAAGAAAGCACAGCGATACGCGACCAGTCACCTCGGACAAATACCCCAAGCAATGTCCACAATGTGATAGGGTATTGCAAACTGCTGCTGCTTACGGTAGACATAAGATAGTACACGACAGACCACCGTTAGATGCTGGTGGGAAAGCAGCTGCAGCTATGGGTGGCATCAGGAAGGATCTGGATAATGATAGTCAAGATGAATCATATCACACGTGCAACAAGTGTTTCAAGGTGTTTTCGTCACGTTACAATTTGAAAAATCACCTAAAAACACACGGTATTCGCATGACAAGTCCTACCAGCCGAAGATCCGTTATCAAGAAAGAGGTTATGGATGAAGAGGACGCGCTGGACGAGGGGGAATTCGATGAACATGCAGCCACTACATCGTCGCCGATGATTTTTACATGTGACGTTTGTGTCATGACTTTTACGACAAAAATGGCTCTCAAGAAGCACAAGGAAACCCATCTGGACGACGAGCACGAACAGAAAAATGCCAACATTCCACAGATCTATTGCAAATACTGCAAGATAACCTTCAACTCATTGATTCTATTGAACAAGCATCTGGCCCAAGCCCATCCCCATCATAATGCGAAAGGCACACCACCAACAAACAGCAGCGCTGGAGgcacaacaaacaacaaaaagttCTCCTGTCACATATGCAAGAAAGCCTTCCAAACAGCCCCAGCTCTGGCCACGCACGTGGGCTGGCATAAGCGTGGCGGCAATGTAACCTTGCTGAATAACAGCAGCATCATCGGCACGCCCACTGGCAAGGTGCTGCGAACAAGCATTGGCAACAACATCACTGCTGCTGCTGGTGGTTCATCACCAACGCCACCTGCTACACCTAATACCACAACTGCAttgcagcagcagcagcagcgcAGCAACAACAATCAGTTCAAGTGTCAAACATGTTCGGCGCTGCTGCCCAACGATACCGCCTTGCAGGTGCACATTCTGGAGAAGCATCGCAGCGTCAGTGCCATCATGCTAATACCCAGATGCAATACGTGCAATCAAGACTTCAATACGCAGGACGAGTACGAGACGCATAAACGTTTACATGACTTTTTGGAAAGGCAGAAACAACACGAGGAAATGATGCAGAGCGGCAAATTTGCTCAGGTTGCATCGAATGTAGCTCCTCCTGCGGCACAATACAACAACACTAAGGTGGGCAAAAGCTTCCCGTGTCAGTATTGCCCAGCCGGGTTTAGTAGGGCTGACACTTTGGGCGCCCATATACGTCAATGTCACAAGGAGCATATAAAGACTGAATTTCGTTGTACGGAATGCGATCGAGTATTTGAGAAATCCAATTCGCTTGCCATACACATGAAAATGCACAACAAGCAGAAggctgttgctgctgctgctgcggCTGCTTCTTCTGTGGCATCGGCTGCTGCTTCTGCTGCGGCTAGTAATAATTCTGTTACTCTGAATACAGCTTCGAGCAATTCGAAGCCATTGTTTTGTTGCTCCATTTGTAGTATGGGCTTTGATTTGCCAAAGGATCTGAGAGCGCATACGATAAGTGCTCACCCATTTTGA
- Protein Sequence
- MEGSISSLGNFQSCCRLCLSEKLDDLKSVYDEAIEDRSLPQKISHFLSIEINNPDRLSTLVCSKCVSTINTWQEFKIHCSQNQIKLEEWFHRKSASTAMGLQPPLLNGFGDHLQIKTEPMGDDDGMSMPLWVKSEPVDHDAVDAVYNEFPPTLSPTVPEKRDSLEDRTCTVCHKEFSSANNRKKHEKQLHGKNQPMRIEQYIRKSMMEIETNTSTNAETNISTNAETTPSNETDGDAAPAEEQATTETTITEEAAAPPPAPPTEAEQQKILFAAGLKLLQKNATPISCENLSKIELSYIEKCKAMLSMHKTLECACHNVQHANIKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTRHNVRCTNSPLDTLTKLSNLKKRSEVKTRLYQNFKCTACFFMYSFHEDFCKHVDEDHAEIEMPYTCSCTRSFDNLEDYKDHVYVSCMVEYYCDICFITTKTLEDFQKHAVDTHDSSEGFILLQDDNYKMRKPPNLHSPKDQVDESVILTGKRERRMSIKAPQHMDIDDEEEDDKDGLLVQPVAPVRYYDPNIFGGTPRSFNKTCPICAKEYSSYNNMMRHYKSHPEAVMPNGVADAATVQDDDGSFYSCPDCGGVYNSKEWQEHLSTPKHAPKSCSECDKIFQFQTELDQHRSVHLNLKVYRDSKTHALKTAMISPTHEDDQPDDGMMLDDNASSIESNATAENVTDNDDKSKKYYCQPCDKLYFNYNSLWDHNKRKHSDTRPVTSDKYPKQCPQCDRVLQTAAAYGRHKIVHDRPPLDAGGKAAAAMGGIRKDLDNDSQDESYHTCNKCFKVFSSRYNLKNHLKTHGIRMTSPTSRRSVIKKEVMDEEDALDEGEFDEHAATTSSPMIFTCDVCVMTFTTKMALKKHKETHLDDEHEQKNANIPQIYCKYCKITFNSLILLNKHLAQAHPHHNAKGTPPTNSSAGGTTNNKKFSCHICKKAFQTAPALATHVGWHKRGGNVTLLNNSSIIGTPTGKVLRTSIGNNITAAAGGSSPTPPATPNTTTALQQQQQRSNNNQFKCQTCSALLPNDTALQVHILEKHRSVSAIMLIPRCNTCNQDFNTQDEYETHKRLHDFLERQKQHEEMMQSGKFAQVASNVAPPAAQYNNTKVGKSFPCQYCPAGFSRADTLGAHIRQCHKEHIKTEFRCTECDRVFEKSNSLAIHMKMHNKQKAVAAAAAAASSVASAAASAAASNNSVTLNTASSNSKPLFCCSICSMGFDLPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -