Casp027649.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293828.1:86826998-86837035[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.028 4.4 9.5 0.9 2 23 29 50 28 50 0.95 2 19 0.24 36 6.6 2.6 1 23 84 106 84 106 0.90 3 19 0.00019 0.03 16.3 2.9 1 23 112 135 112 135 0.98 4 19 0.0032 0.5 12.4 1.2 1 23 147 170 147 170 0.91 5 19 6.1e-05 0.0094 17.9 0.3 3 23 181 201 179 201 0.97 6 19 5.7e-06 0.00088 21.1 0.6 1 23 207 229 207 229 0.97 7 19 0.0013 0.2 13.7 3.3 1 23 235 257 235 257 0.98 8 19 0.00071 0.11 14.5 0.0 1 21 263 283 263 284 0.91 9 19 0.077 12 8.1 0.0 2 19 383 400 382 401 0.92 10 19 1.4 2.1e+02 4.2 5.9 1 23 410 432 410 432 0.97 11 19 0.0054 0.83 11.8 1.3 1 19 438 456 438 458 0.92 12 19 2.3e-05 0.0035 19.2 0.4 1 23 678 700 678 700 0.97 13 19 3 4.7e+02 3.1 0.1 1 23 732 754 732 754 0.94 14 19 0.31 48 6.2 5.4 1 23 788 811 788 811 0.92 15 19 0.0035 0.54 12.3 5.3 1 23 821 843 821 843 0.97 16 19 0.00041 0.064 15.2 0.6 3 23 850 870 848 870 0.97 17 19 0.034 5.3 9.2 1.0 1 23 876 898 876 898 0.94 18 19 1.3e-06 0.0002 23.1 0.5 1 23 904 926 904 926 0.96 19 19 0.0045 0.69 12.0 0.1 1 22 932 953 932 953 0.96
Sequence Information
- Coding Sequence
- ATGTTACATAGGCATtcgagaagaaagaaaaaaactaaaaccaAACAGAAACCAGTACCACCACTCAAATTGGAAAAACCACTGCACTGTAATCAATGCGATGCAATGTTCAACAACAATATAGACTTTGCATTACACTCAAGAGAACACAACTCAAATGGCAAATACTGCTGCCATCTATGCGACTATACCAACAACTCTAAATATCGTACAGAGGCCCATGTGCGGGCCCACGAAGGTTCCACCAAATACCGCTGCGAGATATGCTACAAGCCGTTCAATATCAGCACGCATGCGCAGGAGCACAAGTACTTTCACACCGGCGAACGACCATTTCAATGCGAAATATGCGGCAATCATTTCATGTTCTCCCGCCTTTTAACCAAACACAGGCGCACAGCCCACTACGAGGCCATGTTCGGCAAGCCGCTGGCCAAATACGATTGCAAAGTATGCGGCAAACACTATGAATCATTGCCCGGTCTGCAGCGTCACAACTACAGCAATCACAATGACAAAGGCGAAGATTGGTCggtgatatgtgatatatgcGGCAAGAAAATTGCCACCAAGGagaaattgaaataccatcTGAGAACGCATACGGGTGACAAACCGTTCGCATGCAACTTGTGTGACAAACGTTTTCCGAAAAAGGATCAGCTCAAAGAGCACGAGCGTGTGCATACGGGTGAGAAGCCGTTCACTTGTATGTATTGTGGCAAAAATTTCGGTCACAGGGCGCCGTATCGGTATCATTTGAAAACACATACCGGTGAACGGCCCTACAGTTGTCCCATTTGTGGCAAAGGTTTTATAACGAAAGGTGCAAAGGAGGTCCATGTTATAACATGTAccaaaaAATTTACCAAAATTAAATGCGAAGATATtcagaaagaagaagaagaatcagAGACTGAATGGGTACCAAAGGCAGAGAAAATCAAGAAGGCTCGAAACAGGAGGGAGCAGACTAATCaacaaaaattgatgaaaaaggAGAAgacgaaaaaaatcaaaaaagagaaGAAAGTTAAAAAGGTTAGTAAAGCAAAaccagataaaaaaaatagccCAAAAAAATCGACAACATCCAAAAGAAACACCGAAGACCATCCGCCACCTCCTGAACTTGAAGAACCCATAGTTTGTGATATTTGTAatgaaacatacaaaaataaCGTTGCATTTGCTTTGCACTCCGTATGCCACAGTGAAGATGGCAAATATCACTGTCATCTTTGTTCCTACAGAAATGCCTCAAAATACCATCTGGAAATGCACGTACGCGCCCACGAAGGTGCTACCAAATACAAATGCGAAATTTGCCATAAAGCCTTCACCGTCAGCACTCACGCCATCGAGCACAAATTTCTAATGGATTTTTTCACACCAATTGTAACGATTGATGAATCCACACCGATATTATCCAGCCCTAATAAAAaggtaaaaatcaaaattgaaaagGATAACGAGGCTGAAACTCCTGTTGAAGTCGTTGTGAAGAAAAGAGGCAGACCACGAAAAGAGTgcaaagaagtgaagaaaacaGCAAATAATAATGCAGTGGATTGCGACGTCGATGAAGAAGATTTGGACTTGGATGATGATGATCCTGCTTGGGAATATTCTAAAAAGAAGAGGAAATATAAGagaagaaaatcaagaaaaccTAAAGGAAAGATCCAAAAATCTCCTAATAATAAGTCAGAGAATACTGGAAAATCTTCCAGCGACAGCAATTTAGATGTGGTAACTGTTAAAGAGGAACCAACTGAGAACGGTGAAACTGTTGATATTAAAAAGGAAATTAAAGAGGAACTTGGCGAACTACCATCATTTCTACCTCTATCAGAAGAAGAGTATAGAGAAATATTACCCAATGAGCAATCAAAATTGTACAAATGCCCGTTGTGCATCAAAACATCAGATAACATAATAATCGAACGAACGCAATACGATCTGCGGCAACACTACAAAGAAGTACACCCCGGCAAAAGATTACGCCTATCAAAGTATGCGGCTGAAAATCACCCATGTGACGTTTGCGGCAGGGAATTCAAAACCAGCACCGCTGTCCGCGAACACATGGAAACCCACAACAATTACTTCTATTGTGAAATGTGCAATGCCTCACACAAAAAGATACTCGATCACATTATACATTTGCGTGTCCATGCTGATCCGGGTATATTTCAGTGTTTGATGTGCCCCTACAATACCGAGGACATTAATGCCATCACGGAACATGTTAATAACCATGATGATTTGCTGAAATATTGGTGTGAGACGTGTAAACGTGGCTTTCAGATATTGCCATGGTTCCAAGAGCACGACAACTATCACACCGGCTTGAAGCCGTTCGATTGTGAATTTTGTGGTAAATGTTTCTTGTATTCACGCTACCTGCATGCTCATAAACTGTATATGCACAAGGAGGACGTCTCCTATCCCAGATTGCATGAATGTGTCATTTGTAAGAAGCAGTATCAGCACAAAAACAGTTTAAAGTTGCACATGAACTCGCACACTGGCAGCTTTTCCATTTGTGATATATGCGGCAAGATGTTGTCCAGCAAGGAGAAGCTCAAATTCCATATTAGAACTCATACCGGCTACAAGCCCTACCATTGCATCTATTGTGACAAATCCTTCACCAAAAAGCCCATACTTGTCGAACATGTGCGCATTCATACTGGTGAACGTCCGTATTTGTGTGATTATTGTACGAAAGCTTTCTCACAACGATCCAGTCTAGTCATTCATATGCGAGGTCATACTGGTGAGCGACCGTACGTCTGTCAATTTTGCACCAAAGGTTTCGTTGCCAAAGCCATGTTGAATATACACCTGAAAACCTGCAAGGGTGTATTATTTGGTCATCGAGATATTTAG
- Protein Sequence
- MLHRHSRRKKKTKTKQKPVPPLKLEKPLHCNQCDAMFNNNIDFALHSREHNSNGKYCCHLCDYTNNSKYRTEAHVRAHEGSTKYRCEICYKPFNISTHAQEHKYFHTGERPFQCEICGNHFMFSRLLTKHRRTAHYEAMFGKPLAKYDCKVCGKHYESLPGLQRHNYSNHNDKGEDWSVICDICGKKIATKEKLKYHLRTHTGDKPFACNLCDKRFPKKDQLKEHERVHTGEKPFTCMYCGKNFGHRAPYRYHLKTHTGERPYSCPICGKGFITKGAKEVHVITCTKKFTKIKCEDIQKEEEESETEWVPKAEKIKKARNRREQTNQQKLMKKEKTKKIKKEKKVKKVSKAKPDKKNSPKKSTTSKRNTEDHPPPPELEEPIVCDICNETYKNNVAFALHSVCHSEDGKYHCHLCSYRNASKYHLEMHVRAHEGATKYKCEICHKAFTVSTHAIEHKFLMDFFTPIVTIDESTPILSSPNKKVKIKIEKDNEAETPVEVVVKKRGRPRKECKEVKKTANNNAVDCDVDEEDLDLDDDDPAWEYSKKKRKYKRRKSRKPKGKIQKSPNNKSENTGKSSSDSNLDVVTVKEEPTENGETVDIKKEIKEELGELPSFLPLSEEEYREILPNEQSKLYKCPLCIKTSDNIIIERTQYDLRQHYKEVHPGKRLRLSKYAAENHPCDVCGREFKTSTAVREHMETHNNYFYCEMCNASHKKILDHIIHLRVHADPGIFQCLMCPYNTEDINAITEHVNNHDDLLKYWCETCKRGFQILPWFQEHDNYHTGLKPFDCEFCGKCFLYSRYLHAHKLYMHKEDVSYPRLHECVICKKQYQHKNSLKLHMNSHTGSFSICDICGKMLSSKEKLKFHIRTHTGYKPYHCIYCDKSFTKKPILVEHVRIHTGERPYLCDYCTKAFSQRSSLVIHMRGHTGERPYVCQFCTKGFVAKAMLNIHLKTCKGVLFGHRDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -