Casp014945.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293827.1:17085132-17087280[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 3.7 5.7e+02 2.8 1.8 2 21 7 27 6 28 0.86 2 15 4.7 7.3e+02 2.5 0.1 3 20 35 52 34 54 0.91 3 15 2.6 4e+02 3.3 0.1 1 12 119 130 119 137 0.89 4 15 4.2 6.5e+02 2.6 5.7 1 21 253 273 253 274 0.95 5 15 0.15 23 7.2 5.7 1 23 282 304 282 304 0.97 6 15 0.00022 0.034 16.1 3.1 1 23 322 344 322 344 0.98 7 15 0.4 62 5.8 0.7 1 23 375 396 375 396 0.86 8 15 1.4e-05 0.0022 19.8 1.1 1 23 402 424 402 424 0.98 9 15 0.0004 0.061 15.3 0.1 1 20 430 449 430 451 0.93 10 15 2e-05 0.003 19.4 1.5 1 23 458 480 458 480 0.98 11 15 5.5e-06 0.00084 21.2 3.3 1 23 486 508 486 508 0.98 12 15 0.00011 0.017 17.1 8.6 1 23 514 536 514 536 0.99 13 15 9e-06 0.0014 20.5 0.1 1 23 542 564 542 564 0.98 14 15 1.5e-05 0.0023 19.8 0.2 1 23 568 590 568 590 0.98 15 15 0.00021 0.033 16.2 0.1 1 23 598 620 598 620 0.97
Sequence Information
- Coding Sequence
- atGGAATCGTTATCATTGAAATGCCCTTTTTGTTGTGAAGAGAATTTTACCTCTCATTTATCTTTAAAATATCACATTCTAAGTTTAGTTGACAATATTCTATGTCCTGCTTGCGACTGCAGGTTTGATAATATACTAGAGTTAGCAGAACATCTAGGTAGACAATGCAAAGATGAACAAGAAAGTGTCGAGTCTACTTTACTGGTAAAAACAGAAGATGAAAATTTCTATGAGGTATCCGCAGAGATAACTGAGGAAGAGGGACAAGATTTGGAAATAGAAGCAACCCTAGCACAGGAGGTGATAGGACTAAAGCCAATACCAAATGGAAATTCCCAAAATGATCCTCCCATGTACCATTGTCAAATGTGCGATATACATTTTGAATCAATTGAAGAACATTTACAAGAATATCATGAAGGAGATGATGTCATATTGGAGACTGCTGAAGatatacaaataaatcaaaacgAGATAAGAGCAGACTCAGATGTGGAAGCTCATGAATATGTATTCGAAATACCTGAAGATCAATATGTTACTAGCAATGCTAATGAAATTATAGAAGAAGGAGAGTTCGTCGATAATGAAGGACGAGCATATACTagaaaagttgttaaaattgataaattctgGGAAGACAAATCTTTAGATACCCCAACGACAGAAAAATATGTTGTTGAAAACGGCAAAATTAGAAAGATTGAGGATAGCGAGGAAATATCTATCGAGAACAAGAAATCTATTATAGAAATCCATCAATGTCCAAAATGCTGCTTACAATTTCCCAAACTTGATCATTTTGCCAAACATATTTGTGATCCCTCGAAAGTAAAAAACAGATTCAGATGTATATATTGCTCTACTGTATTTCATAATTACCATACTTTAATAACACACCTGAAATCTCATCTAGTTCAAGATGAAGATGGTAATACAAAGAGAATTGTGACGGTAGGACCTCATACATGTGAAGTATGTAAAACAATGTTCCCATCATTCAAAAGTTTGCGTTTACACCAGAGAATGCATGATCCTGTTAAAGAGAAAACACCCGAAGCCCCCGTCAAATATAGCTTGACTGGTGCAATTGATGATGAAAAACAAACAATTCGTGACATGTTCATGTGCACTATATGTAATAATTCGTTTGATAAAGAATACGAAGAAGTTCATTTGAAATCTCATAGTACAGAAGAAAATTATAACTGTTCTGTTTGTAACCGAAAGTTTTATACCAAAGAAAACTTGGAGATGCATGCCAAGGTTCATTCAAACATAAAGAAGTTTGCTTGTTCATATTGCAAAAAACCTTTTGCTACTTATGATGCATTGCAAGAACATGTATCGAATCAGTGTCAGAAACGTCAATATGAATGTGGTTACTGTGGTAGACGCTTCTCTAGGCCACATGAAAAAGTAAAGCATGAACGAATCCATACTGGAGAAAAACCACATGTATGTCAGATTTGTGGTAAAGCTTTTCGTGTCAGTTATTGCTTAACATTGCATTTGAGGACACATTCAGGCACCAGACCTTATCAATGTAATCATTGTGGTAAACGATTCAAATCGCATAGTGTATATAATCATCACTTATTAACGCATTCCGATGTTCGGGCTTATAAATGTCCTCTTTGTCCAAAGGCATTCAAAACAGCAGTCCAATTAGCGGGACATAAAAATAGCCATATAAAACCATTCACGTGTACGGAATGCAATCGCCCATTTGCCTCATTATATGCCGTCAGAGCCCACATGGAAACTCACAAGAGgaataacaatttaaaatatgattGCTGGTTATGCGGTGCAACATATGCCCGAGCTTTTGCTCTTAGAGATCATATGAAAGAGCATGTGCGAAATGTCCCAGACGAAACAGACATAAATGTTGATGGAATTGTCCTAGCTGAACTAGAAACAACTGATAGTACAACACATATTGCAGAAACATGTGAGCTtaagattgaagaaaatatttga
- Protein Sequence
- MESLSLKCPFCCEENFTSHLSLKYHILSLVDNILCPACDCRFDNILELAEHLGRQCKDEQESVESTLLVKTEDENFYEVSAEITEEEGQDLEIEATLAQEVIGLKPIPNGNSQNDPPMYHCQMCDIHFESIEEHLQEYHEGDDVILETAEDIQINQNEIRADSDVEAHEYVFEIPEDQYVTSNANEIIEEGEFVDNEGRAYTRKVVKIDKFWEDKSLDTPTTEKYVVENGKIRKIEDSEEISIENKKSIIEIHQCPKCCLQFPKLDHFAKHICDPSKVKNRFRCIYCSTVFHNYHTLITHLKSHLVQDEDGNTKRIVTVGPHTCEVCKTMFPSFKSLRLHQRMHDPVKEKTPEAPVKYSLTGAIDDEKQTIRDMFMCTICNNSFDKEYEEVHLKSHSTEENYNCSVCNRKFYTKENLEMHAKVHSNIKKFACSYCKKPFATYDALQEHVSNQCQKRQYECGYCGRRFSRPHEKVKHERIHTGEKPHVCQICGKAFRVSYCLTLHLRTHSGTRPYQCNHCGKRFKSHSVYNHHLLTHSDVRAYKCPLCPKAFKTAVQLAGHKNSHIKPFTCTECNRPFASLYAVRAHMETHKRNNNLKYDCWLCGATYARAFALRDHMKEHVRNVPDETDINVDGIVLAELETTDSTTHIAETCELKIEENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -