Basic Information

Insect: Crioceris asparagi
Gene Symbol: TSF1
Assembly: GCA_958507055.1
Location: OY293826.1:100042890-100044245[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0015 0.24 13.5 1.3 3 22 86 105 85 105 0.94

2 10 7e-07 0.00011 24.0 1.3 1 23 112 134 112 134 0.98

3 10 1.5e-05 0.0024 19.8 2.4 3 23 177 197 175 197 0.93

4 10 1.8e-06 0.00027 22.7 4.5 1 23 203 226 203 226 0.97

5 10 1.7e-05 0.0026 19.6 1.3 1 23 236 259 236 259 0.94

6 10 8.7e-05 0.013 17.4 0.1 2 23 275 297 275 297 0.95

7 10 0.24 38 6.5 3.4 3 23 324 345 323 345 0.97

8 10 0.00015 0.023 16.6 4.1 1 23 365 387 365 387 0.99

9 10 0.0029 0.45 12.6 3.0 1 23 393 415 393 415 0.97

10 10 7.7e-07 0.00012 23.8 0.5 1 23 421 445 421 445 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0015	0.24	13.5	1.3	3	22	86	105	85	105	0.94
2	10	7e-07	0.00011	24.0	1.3	1	23	112	134	112	134	0.98
3	10	1.5e-05	0.0024	19.8	2.4	3	23	177	197	175	197	0.93
4	10	1.8e-06	0.00027	22.7	4.5	1	23	203	226	203	226	0.97
5	10	1.7e-05	0.0026	19.6	1.3	1	23	236	259	236	259	0.94
6	10	8.7e-05	0.013	17.4	0.1	2	23	275	297	275	297	0.95
7	10	0.24	38	6.5	3.4	3	23	324	345	323	345	0.97
8	10	0.00015	0.023	16.6	4.1	1	23	365	387	365	387	0.99
9	10	0.0029	0.45	12.6	3.0	1	23	393	415	393	415	0.97
10	10	7.7e-07	0.00012	23.8	0.5	1	23	421	445	421	445	0.93

Sequence Information

Coding Sequence: ATGTGTAAAGATAACTATACAACTCTTATAAACATTGCAACTCGAGAAAAAGAGGAAAATGTATGTGAACAAATCCATGACAATAATGTCAATGAAATTAAAACTGTGCTCTCATCAGTTTCACCTGAAGCTCAGAATACATTTCAAAATGATAAGAAAGAAAGATATGAATCAAAAGATGAGACAAATATCAAATTACGTAAAGAAAATTCACATGATCGACAGCTCCAAACTGAAAGTGATAACGTACGGAGTTGTAGATATTGTGATGAATCTTTTCACACGCTCAGACATCTGGAGGGTCATATGTTAACTCCCTCAGATACCAAACCattcaaatgcaatatttgCCCTATCCATTTTTCGAGGAAATCATCTCTTATTTCACACCAAATAATACATTCTGCTGTTAATAGCAAATCTGATTCATTTGATGGTTGTGAtagttcacaatatttattggAAAAGTCGAACGAACACGATATCATCGTTACAGCGAAAAATTTCAAAGGTAGAAAAAAGTGGCATTGTATTTATTGCGAcaagtttttttcgaaaaaggatGACTTGCAGCGACACCTCAGAATACATACGGGATTTAGACCGTTCCAGTGTAAATATTGCGAGAAAAATTTCACTCAAAATTCAACATTGATTCGACATATTCATTCAAAACATGCTGATAGAGAAACATATCaaactaattttgaatgttATGTATGTGAGAAAAAGTTCGTCCGGAAAGATCACTTAGAACAGCATGTAATAAATTTACATGTGAAAAAACAAACTTTTGTTTCTGATACTGTCGAGAAAGGAGGTTCCTGCGACAAATGTGGAAAAAGCTTTAGTTTGATTGCTTATTTAGAACAACATATAGAAAGAGTTCATCGGCCAGAAAATACCAAAATTAAATCTAGGATTAAAAAGGTCGACGACAAGTCCCTAATGTCCAGTGTGCCAAAGCTGTGCAGTATATGTGGAAAACTTTTCCAAAAAGGAAAAGCTTATCATGCACACATGAGTCGATGTCATTCATTGCGagagaagaaaataaagaatcATACTGAGAAACCTAAACCCAAGGATAAATATCAGTGTTGGCACTGCGGAAAAATTGTTAACAGTCACTGTAACCTATCGGTTCACCTGCGGGTGCATACTGGGGAAAAACCGTATCAATGTAAATtttgtccaaaaagattttcggttTGGACTTGCAGACAGGAGCATGAAAACATTCATACAGGATTTAAACCTTTCCAGTGTGAATCGTGTGACAAAGCTTTCAAACAGCGCAGTGCTTTGCTAAAACATTTACGATCAGCTATCCATAAGATACAGTCGAAGACTTAA
Protein Sequence: MCKDNYTTLINIATREKEENVCEQIHDNNVNEIKTVLSSVSPEAQNTFQNDKKERYESKDETNIKLRKENSHDRQLQTESDNVRSCRYCDESFHTLRHLEGHMLTPSDTKPFKCNICPIHFSRKSSLISHQIIHSAVNSKSDSFDGCDSSQYLLEKSNEHDIIVTAKNFKGRKKWHCIYCDKFFSKKDDLQRHLRIHTGFRPFQCKYCEKNFTQNSTLIRHIHSKHADRETYQTNFECYVCEKKFVRKDHLEQHVINLHVKKQTFVSDTVEKGGSCDKCGKSFSLIAYLEQHIERVHRPENTKIKSRIKKVDDKSLMSSVPKLCSICGKLFQKGKAYHAHMSRCHSLREKKIKNHTEKPKPKDKYQCWHCGKIVNSHCNLSVHLRVHTGEKPYQCKFCPKRFSVWTCRQEHENIHTGFKPFQCESCDKAFKQRSALLKHLRSAIHKIQSKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00388938;
90% Identity: iTF_00388938;
80% Identity: iTF_00388938;