Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293826.1:89510813-89518179[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.094 15 7.8 5.8 2 23 138 159 137 159 0.92

2 11 1.4e-07 2.2e-05 26.1 1.2 1 23 165 187 165 187 0.98

3 11 1.9e-06 0.00029 22.6 1.9 1 23 193 215 193 215 0.98

4 11 0.0013 0.19 13.7 5.1 1 23 221 243 221 243 0.98

5 11 2.2e-05 0.0034 19.2 0.1 2 23 254 275 253 275 0.97

6 11 4.8e-05 0.0074 18.2 0.9 1 23 283 305 283 305 0.98

7 11 5.1e-07 7.9e-05 24.4 4.4 1 23 311 333 311 333 0.99

8 11 1.4e-06 0.00021 23.1 0.7 1 23 339 361 339 361 0.99

9 11 4.8e-06 0.00074 21.3 1.6 1 23 367 389 367 389 0.98

10 11 1.8e-05 0.0027 19.6 2.5 1 23 395 417 395 417 0.98

11 11 0.00028 0.044 15.8 1.9 1 23 423 446 423 446 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.094	15	7.8	5.8	2	23	138	159	137	159	0.92
2	11	1.4e-07	2.2e-05	26.1	1.2	1	23	165	187	165	187	0.98
3	11	1.9e-06	0.00029	22.6	1.9	1	23	193	215	193	215	0.98
4	11	0.0013	0.19	13.7	5.1	1	23	221	243	221	243	0.98
5	11	2.2e-05	0.0034	19.2	0.1	2	23	254	275	253	275	0.97
6	11	4.8e-05	0.0074	18.2	0.9	1	23	283	305	283	305	0.98
7	11	5.1e-07	7.9e-05	24.4	4.4	1	23	311	333	311	333	0.99
8	11	1.4e-06	0.00021	23.1	0.7	1	23	339	361	339	361	0.99
9	11	4.8e-06	0.00074	21.3	1.6	1	23	367	389	367	389	0.98
10	11	1.8e-05	0.0027	19.6	2.5	1	23	395	417	395	417	0.98
11	11	0.00028	0.044	15.8	1.9	1	23	423	446	423	446	0.96

Sequence Information

Coding Sequence: ATGGCATtgataaaagatattaaaatcAAAGACGAAACTCAAGAGGCTGAGTCAAATAGTAAAGCTAAAAGTATTCTTGACAATTTATTGCTCAATAACGATGATACTTCATATGATTCTCCTGAACTTCTTACCACAAGTCaggtatataataatatcgACAATGGCATTGAAATATCTGAACCAGTGTCTGAGGAAAGTTGTCATGGAGATTTTCAATTACATGACAATAAtgattcatcattaattagcaATATGGATACAGAAACAGAAACCTCTAAAGGTTTTGCCAGAAACAATGATATATTTAAGAATGTTGATTTTAAATGCAGGGTATGTTCTCAGCAGTTTGACTGCGAGAACGGTTTGATAGAACATGAAATTAACAGAAGATTGGCCGATAAACGTATCAAATGTTGTGGATGTGAAAAGTATTTCAGAGATAAGACACAGTTCAATGTACATTGTAGAGGCCACACTGGTGAGAAACCATTTGTATGTACCATATGCAATAAACGATTCACGGTGAATGGAAATATGAAAAAGCATATGCGAATTCACACCGGGGAAAGACGTTTTGAATGTGACAAGTGTGGGAGAAAATTCTCACAATTTGCACATCTTGAAGATCATGCAAGAACACATTCAGCTTATGCTCCATTTAAGTGTGACTTCTGCAATGTCCATTTCAAGACCAAAGCTAGGCTTGTAAAACACCGTAAGTCTCACGACGAACAAAGAATGACCAAACGATCGATACCATGTCCATTGTGTAATAGAGTATTAAGGAGCAATAAACAGCTTATTGCACACATGGAAACTCATGATAACAGTACAAATGATCCGTTTCCTTGTGAATTATGtcagaaaaaattcaaaaacctaCTGCTTCTGAGTATCCATATGAAGAGTCACAATCAATCGAAAGATTACCAATGCACAATATGCTACAGGACATTCTATAATGCAAGTCATTTGAGAAGACATTTAAACACTCATACAGGTGTTCGACCTTATTCGTGTGAGACATGTACGCGAGCGTTTGCTTCACTACAAAACCTGAAACGTCACATAATGACTCATACTGGAGAGAAGCCTTTCTCTTGCTCTGAATGTGGAAAGTCTTTTCTTTCATATGAAAACATGAGCAGGCACATGAGAACGCATACGGGGGAGAAGCCATTTCCTTGCAACATATGTGGCAAACATTTTGCTCACAGTACATCTGCCAAAGAACATATGAACAGTCATGGTGGAGAGAAGTCATTCAGTTGTGATTTATGTGATAAaggattttttatcaaaaaaactcTTTATAGACATATGAGAGATAGACATCCCAATTACTTTGCCGAgttcaaaagaaaaaatgttacgAAGCCTACACCCAATGTAATGATGTTTAAGAGcgatatattaaaaaatgaagGGCTAGTGTCTGGTGTGAATAATGTTAATTATTCCAAAGTTGATATTCTTAATTGTGACGTAGATATTGATAATTGTGATGGAGAAGATAGAAAACCTGATATTAAAGACATTTTTGTACCAATGAGTGAACGTTGTAATACTAGTGAAGATTTTAAACCGATTATTGATGAGAAAACCAAGTATATCGAAGATAATCATAATAGTACAGATCCGATTGTGAAACAagaaaaatttgtaaaaatagaaaaaattgaTGAGGACTATAGCTAA
Protein Sequence: MALIKDIKIKDETQEAESNSKAKSILDNLLLNNDDTSYDSPELLTTSQVYNNIDNGIEISEPVSEESCHGDFQLHDNNDSSLISNMDTETETSKGFARNNDIFKNVDFKCRVCSQQFDCENGLIEHEINRRLADKRIKCCGCEKYFRDKTQFNVHCRGHTGEKPFVCTICNKRFTVNGNMKKHMRIHTGERRFECDKCGRKFSQFAHLEDHARTHSAYAPFKCDFCNVHFKTKARLVKHRKSHDEQRMTKRSIPCPLCNRVLRSNKQLIAHMETHDNSTNDPFPCELCQKKFKNLLLLSIHMKSHNQSKDYQCTICYRTFYNASHLRRHLNTHTGVRPYSCETCTRAFASLQNLKRHIMTHTGEKPFSCSECGKSFLSYENMSRHMRTHTGEKPFPCNICGKHFAHSTSAKEHMNSHGGEKSFSCDLCDKGFFIKKTLYRHMRDRHPNYFAEFKRKNVTKPTPNVMMFKSDILKNEGLVSGVNNVNYSKVDILNCDVDIDNCDGEDRKPDIKDIFVPMSERCNTSEDFKPIIDEKTKYIEDNHNSTDPIVKQEKFVKIEKIDEDYS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -