Basic Information

Insect: Crioceris asparagi
Gene Symbol: Snai1
Assembly: GCA_958507055.1
Location: OY293830.1:32746426-32752030[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0001 0.016 17.1 0.1 1 23 311 333 311 333 0.95

2 12 1.9e-05 0.0029 19.5 1.5 1 23 341 363 341 363 0.99

3 12 2.4e-05 0.0037 19.1 0.2 2 23 371 392 370 392 0.97

4 12 0.002 0.3 13.1 2.4 1 23 398 420 398 420 0.98

5 12 0.0001 0.016 17.2 2.9 1 23 427 449 427 449 0.99

6 12 0.00056 0.086 14.8 4.1 2 23 456 477 455 477 0.94

7 12 7.6e-06 0.0012 20.7 0.1 1 23 483 505 483 505 0.98

8 12 1.5e-06 0.00022 23.0 3.3 1 23 511 534 511 534 0.96

9 12 3.6e-06 0.00055 21.7 0.5 1 23 540 563 540 563 0.96

10 12 4.6e-05 0.0071 18.3 2.3 1 23 569 591 569 591 0.99

11 12 0.00015 0.023 16.7 0.4 1 23 597 619 597 619 0.94

12 12 0.0027 0.41 12.7 0.3 1 22 625 646 625 649 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0001	0.016	17.1	0.1	1	23	311	333	311	333	0.95
2	12	1.9e-05	0.0029	19.5	1.5	1	23	341	363	341	363	0.99
3	12	2.4e-05	0.0037	19.1	0.2	2	23	371	392	370	392	0.97
4	12	0.002	0.3	13.1	2.4	1	23	398	420	398	420	0.98
5	12	0.0001	0.016	17.2	2.9	1	23	427	449	427	449	0.99
6	12	0.00056	0.086	14.8	4.1	2	23	456	477	455	477	0.94
7	12	7.6e-06	0.0012	20.7	0.1	1	23	483	505	483	505	0.98
8	12	1.5e-06	0.00022	23.0	3.3	1	23	511	534	511	534	0.96
9	12	3.6e-06	0.00055	21.7	0.5	1	23	540	563	540	563	0.96
10	12	4.6e-05	0.0071	18.3	2.3	1	23	569	591	569	591	0.99
11	12	0.00015	0.023	16.7	0.4	1	23	597	619	597	619	0.94
12	12	0.0027	0.41	12.7	0.3	1	22	625	646	625	649	0.92

Sequence Information

Coding Sequence: ATGTCCTCTGAAAACTCCAACTCAAGTTACTGCTTGGTTTGCAACAATAATTGTGCAGATAACGAtgcttttcatatttttgcagataagGAGCGATTGGGCTTCACCGAAGATCTTGCATCACTGCTATCGAAGATTTTGAACAAGAATATTGAAGAGGATCCTGAAACCTTACAAATTATTTGCGAGAAATGTTTTAAACTAGCACAGGAACTGGACCAACTGCAGAATCGagttaatgaaattaaaaatgaaattctaGATAACCATAGAGGAAGTTGTAAGATGCAACAGGAATCCAGTAAAAATCATATCAACGAAAAACATCTCGAGGATTCTAACAAAGAAAATCAGATTCCAAAGAAACTTTTATTCATTCCAGACTCAGATGACGAATCCCTACAGGTTAACCATGAGAAAAACTTCGATGAAATGGAATTAGCTCTTGCGAAAATGCAGGCCGGTATGGGCGACTCCATAAATGAAGTAGATAAAGATCAAGTTTTGCAAATAGAAGTTGATGAAGCATCTCTCCAAAACTTTTCAGCTGATGATGGAGAAATATTAGATTCCGGAGCCATCGAACATTCTTCCGATTCAGATTATGAGCCGCCTTCAATATTGAGATCTGATGAACTTGTAAGGATTATCAAAGCACCGGACAAACAACCTATTGATATCAAAATTAAGATTGAATCAAATAATGACGAAACTGTGAATAGCAAACCTAATATCCTTAAGAGAAAAATGGTTCATACATCACCATCGCCTGAACCGGATGAAAAGAAAGTAGAGGACTTCTATGCCCTATCAGTAGTGGCAAGAAAAGACAATATATACACGTGCTTGTTATGTCAAGGCGATGAAACCGTGGAAGGCGAAGCAAAAGATATTACAGCCCATGTGAAACAATCACATGGAGTTAGATTGTATATTTGTGACGTTTGTGGGCAAGTATTCAGAAAGAGGAATCTTCTGTCGGCTCATCTGGACGAACATGTCGCTGCTGAAGATGGTGATTTTCAATGTGAGGTGTGCAACAGGATATTCAGCAATTTACGATTGTTCCGCATCCACAGGCGCATGCACTATCCACAAAACAAGGCTTGGGAATGTGAGACATGCGGAAAGAGATACAGCAGCAGAAATCTGTTAGAAGAACATGTTAATACCCATCTAGgAATTCGCCCATACATTTGCTCGTTATGTGGTAAGGATTTTGCGAGCAAGTACACTTGCAAAGCACATGAAAAGACACACGAATCTCGTCCAAGACCGTTTAAATGTAGCATGTGCTCAAAGACATTCTTGAGTCAACAGAATCTGACGCAACACGAGCGCACCCATTCGAGCATGAAAGATTGCAGTTGTCATCTGTGTGGAAAGATGTTCGGTTCTCGACATAATCTCGAAATTCATTCGATAGTTCATACTGGCTACAAGCCCTTCGTTTGTGGAAAGTGTGGCAAGGCTTTTGCTAGAAAGGCTGAAATAAGGGATCACGAGAGGACACATACAGGAGAACGACCATTCAAATGTGAACATTGTAATGCATCATTCAGTCAAAGGTCTAATTTACAATCCCACCGAAGAGCAACACATTACAATGATAAACGCTATCAGTGCACTGAATGTGGAAAAGCTTTCAAAAGAAGGCGATTGCTGGATTATCATATAAAGGCAGCTCATACTGGTGAAAGACCTTTTAAATGTGAACTTTGCGAAGCAACATTCGTCTACCCGGAGCATTTCAAGAAACACAGACGAATTCATACTGGGGAGAAACCATTTCTTTGTGAAGTGTGCGGAAAAGCTTTCAATAGTCGTGATAATCGAAATGCGCACAGATTTGTACATTCGGACAAAAAACCGTACGAATGTCTGGTGTGCGGTGCCGGTTTTATGCGAAAACCATTGCTGTACCATCACATGCAGCAAAGTGGTCATTTGAATGATACGATTGTCGTAAATCAACCCAgATTGACAACTGATGATGATCAATTGGTGACTGTGAATTCAGCCGGTGAAATGGAAATCGTTGAGGCAGGAACAGCGACTGGTAACGATTCCAAATTCTACATTCAAGATCAGGATGGTAATGAACATATCATTCTGGATGGTCAACAAATCAGCTTTGCTGAAAATGCCTCTGATGAGGAAAATGAAGGAGTGATAAATCAAATTGAACAAGTTGTTACTGGTCAAGTTGAAGGAGACTatgaagagatcatatccacTGATGCCATAGCAAATGGTGAGACGCAAATCATAGATACACCAGAAGGGCAGGTGCAGCTAGTCAAGGTCAAGATACCCAATGAGAATGGAGAAGAAGAGGAGGCCTGGATTAAGATTGTACCCGAGTAA
Protein Sequence: MSSENSNSSYCLVCNNNCADNDAFHIFADKERLGFTEDLASLLSKILNKNIEEDPETLQIICEKCFKLAQELDQLQNRVNEIKNEILDNHRGSCKMQQESSKNHINEKHLEDSNKENQIPKKLLFIPDSDDESLQVNHEKNFDEMELALAKMQAGMGDSINEVDKDQVLQIEVDEASLQNFSADDGEILDSGAIEHSSDSDYEPPSILRSDELVRIIKAPDKQPIDIKIKIESNNDETVNSKPNILKRKMVHTSPSPEPDEKKVEDFYALSVVARKDNIYTCLLCQGDETVEGEAKDITAHVKQSHGVRLYICDVCGQVFRKRNLLSAHLDEHVAAEDGDFQCEVCNRIFSNLRLFRIHRRMHYPQNKAWECETCGKRYSSRNLLEEHVNTHLGIRPYICSLCGKDFASKYTCKAHEKTHESRPRPFKCSMCSKTFLSQQNLTQHERTHSSMKDCSCHLCGKMFGSRHNLEIHSIVHTGYKPFVCGKCGKAFARKAEIRDHERTHTGERPFKCEHCNASFSQRSNLQSHRRATHYNDKRYQCTECGKAFKRRRLLDYHIKAAHTGERPFKCELCEATFVYPEHFKKHRRIHTGEKPFLCEVCGKAFNSRDNRNAHRFVHSDKKPYECLVCGAGFMRKPLLYHHMQQSGHLNDTIVVNQPRLTTDDDQLVTVNSAGEMEIVEAGTATGNDSKFYIQDQDGNEHIILDGQQISFAENASDEENEGVINQIEQVVTGQVEGDYEEIISTDAIANGETQIIDTPEGQVQLVKVKIPNENGEEEEAWIKIVPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -