Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293832.1:36320865-36326374[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.34 52 6.1 1.6 2 23 182 204 181 204 0.92

2 12 0.0022 0.33 13.0 2.1 2 23 209 231 209 231 0.97

3 12 5.6e-06 0.00087 21.1 3.7 1 23 237 259 237 259 0.99

4 12 3e-05 0.0046 18.8 1.8 3 23 267 287 265 287 0.96

5 12 2.4e-05 0.0037 19.1 4.9 2 23 294 315 293 315 0.97

6 12 1.1e-05 0.0017 20.2 1.6 1 23 321 343 321 343 0.98

7 12 6.3e-06 0.00097 21.0 0.6 1 23 349 371 349 371 0.99

8 12 0.00017 0.026 16.5 6.2 1 23 377 399 377 399 0.98

9 12 1.3e-06 0.0002 23.1 0.1 1 23 405 427 405 427 0.99

10 12 1.2e-05 0.0018 20.1 5.9 1 23 433 455 433 455 0.98

11 12 7e-05 0.011 17.7 0.6 1 23 461 483 461 483 0.98

12 12 0.00015 0.023 16.6 0.1 1 23 489 511 489 511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.34	52	6.1	1.6	2	23	182	204	181	204	0.92
2	12	0.0022	0.33	13.0	2.1	2	23	209	231	209	231	0.97
3	12	5.6e-06	0.00087	21.1	3.7	1	23	237	259	237	259	0.99
4	12	3e-05	0.0046	18.8	1.8	3	23	267	287	265	287	0.96
5	12	2.4e-05	0.0037	19.1	4.9	2	23	294	315	293	315	0.97
6	12	1.1e-05	0.0017	20.2	1.6	1	23	321	343	321	343	0.98
7	12	6.3e-06	0.00097	21.0	0.6	1	23	349	371	349	371	0.99
8	12	0.00017	0.026	16.5	6.2	1	23	377	399	377	399	0.98
9	12	1.3e-06	0.0002	23.1	0.1	1	23	405	427	405	427	0.99
10	12	1.2e-05	0.0018	20.1	5.9	1	23	433	455	433	455	0.98
11	12	7e-05	0.011	17.7	0.6	1	23	461	483	461	483	0.98
12	12	0.00015	0.023	16.6	0.1	1	23	489	511	489	511	0.98

Sequence Information

Coding Sequence: ATGTCTGAAAATGTATTAGGTGTTATTCCTAGCTTTGATAAGATATGCAGAACTTGTTTAGGTGAAAAAACTACCAGCGAACTACGACCGCTATTTGAAGATTCTATAGAAAAATATCTGTTTGATATCACCTCAATCAAGATTACTGAGAACGATGGATATCCCCAACAACTTTGCACTAGATGCTATGATACTTTACTTGTGGCCAAGAATTTTAAAGAGCTTTGTCGAAGATCGGATTTTCAATTAAGATCAATCAAGTACCCTGAAAAAAACATCATCTATCATCCAATATCCGTTCTTAGCAATGTGAAGGAGGATTTAACTCACAGAAAAGATCAGATAAGACCACAAGATGAGAATACTATGAGAAAAACGAACCTTGATTTACCATCTGTTATATGGACTGATGGATTCCCTGATCCAAATGAGGATGACAATTCAAATACTGATGTTTATacagttttaaattttgaagcaaaggaGTTACACAGAGGACAAGGATCAGATACAGTCAACAAATCTGAACAATTGAACGTGGTCAGCTGTCAAATGTGTCAAAGTATATTCAAATCTGATCATCTCTTGAGAatacattccataagaaaacatAATATTTACCCCACATGTACGATTTGTGGCCAAGAATTCAATGCTCTGAAGTACTACAAAATTCACATGAAGTCATGTCATACAACTCATAGACCATTCGAATGTAATGTATGTCAAAAAACATATCGACTGTCAACTCACCTGGCAAAACACCAACGAACACATGGTGGTGAAAAGAAGCACTTGTGTCAAATATGTGGCAAGAGCTTTTTTGAGCAGAATCAATTGGTGATCCATACAAGAACCCATACTGGTGAAAAGCCAAAAACTTGCAAGATATGCGGAAAACACTTTTCAGATACGCATGGTTTGACAACGCACCAGAAAGTGCATACTGGTGAAAGAAAATATGAATGCGACATCTGTGgTATGCGATTTGCTCATTCATTTGTTCTGAAAAGACACAAGCGAGTCCACTCTGGTGAGAAGCCGTACAAGTGTTCCGTATGTTTTGCTGCTTttgcttcttcttcttatttgaCGGTACATACTCGTACCCATACACAGGAAAGGCCGTTTACCTGTCACAATTGCAAAAAGTCATTTGTTAGTAAATGTGCTTTGATGGCACATAACAAAACACACACCGGTGAAAAGAAATACCAGTGCGCCATCTGTGGAAAAAGATCTGGACGAGCTGCTGATCTAAGGATGCATATGAGGACACATAcggGTGAAAAACCGTACTGCTGCGACCAATGTCCCAAACGTTTTCACACCTCCAGCAATTTGATGGCGCACAAAAGAACACATTCGTGCATCAAGAATCACGTCTGCACTACTTGTGGACGGGCTTTCGGTGATGCTCGCACTTTGGCCAGCCACAATCGAACGCACACCGGAGAAAAGCCGTACGTTTGCAGCTTGTGCGGCAACAAGTACACACAGTCTGGACAGTTGGCCGCCCACGGGAAGATACATGCTGCTGGCACAGGTTGA
Protein Sequence: MSENVLGVIPSFDKICRTCLGEKTTSELRPLFEDSIEKYLFDITSIKITENDGYPQQLCTRCYDTLLVAKNFKELCRRSDFQLRSIKYPEKNIIYHPISVLSNVKEDLTHRKDQIRPQDENTMRKTNLDLPSVIWTDGFPDPNEDDNSNTDVYTVLNFEAKELHRGQGSDTVNKSEQLNVVSCQMCQSIFKSDHLLRIHSIRKHNIYPTCTICGQEFNALKYYKIHMKSCHTTHRPFECNVCQKTYRLSTHLAKHQRTHGGEKKHLCQICGKSFFEQNQLVIHTRTHTGEKPKTCKICGKHFSDTHGLTTHQKVHTGERKYECDICGMRFAHSFVLKRHKRVHSGEKPYKCSVCFAAFASSSYLTVHTRTHTQERPFTCHNCKKSFVSKCALMAHNKTHTGEKKYQCAICGKRSGRAADLRMHMRTHTGEKPYCCDQCPKRFHTSSNLMAHKRTHSCIKNHVCTTCGRAFGDARTLASHNRTHTGEKPYVCSLCGNKYTQSGQLAAHGKIHAAGTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -