Casp028335.1
Basic Information
- Insect
- Crioceris asparagi
- Gene Symbol
- -
- Assembly
- GCA_958507055.1
- Location
- OY293829.1:8542957-8550834[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 9.9e-05 0.015 17.2 1.1 2 23 207 229 206 229 0.95 2 13 0.21 32 6.7 1.5 1 23 262 285 262 285 0.78 3 13 2.4e-05 0.0036 19.2 0.2 1 23 291 313 291 313 0.99 4 13 6.8e-05 0.01 17.7 1.4 2 20 319 337 318 339 0.95 5 13 4.2e-06 0.00064 21.5 2.9 1 23 350 372 350 372 0.97 6 13 4.9e-05 0.0075 18.2 0.5 1 23 382 404 382 404 0.98 7 13 1.1e-05 0.0017 20.2 0.4 1 23 410 432 410 432 0.98 8 13 1.5e-05 0.0024 19.7 2.0 1 23 438 460 438 460 0.99 9 13 1.1e-05 0.0017 20.2 4.9 1 23 466 488 466 488 0.96 10 13 0.00015 0.023 16.7 1.2 1 23 494 517 494 517 0.96 11 13 0.00018 0.027 16.4 2.1 2 21 524 543 523 545 0.93 12 13 4.2e-06 0.00064 21.5 1.4 1 23 551 573 551 573 0.98 13 13 7.8e-05 0.012 17.5 3.3 2 23 580 602 579 602 0.93
Sequence Information
- Coding Sequence
- ATGGAGGATATAAacgaaaaaaatgtaaaatccGAAATCAAATTGGAGCAAGTGGTCCATGAAGTCGAAAATGAAGAATTCACAGAAGTCCATAATGTCGTGCTCGAGAATGTAGAGATTGAAGAAAACGCCCAGGAGGTCCCTATTATAGTTAATGACTACCCCACAACTGATTCAGATGGTAATCTTAAGATTACCACCGTACAAGATAACGTTGTTCGTACATTCATCATAGATCAATCCGAATATCAAGCGTATGAACAGAATGGCCAAGAAATTCTGTATGAAGCTGCTGATGAACATGGTAACACCATTCAATATGTAATTGAAGAAGCCGACTACGATGAAGAGTCGTCTCAGTCGGGAGATGCTACCGAAGTTCAATACATCTTCGAAAATTCTGACAATATTGAAGAATCTGAAATCGTAGATGACCCCGATGATCAAATGGACGACGACAATGATCCTTCTAGAATGTCAGTTGAATCATCTCAAGATGAAGACTATAAGATGGAAGAAGATGGCGAAGAAGAACATGATGACGTTGAAGAGGATGTTGGTGATGACGATGACAAGGATCCGTCTTACAGTGTTGATGAAGAAGATAATGGGAATATCCAGTGTGATGTTTGCTTGAAGTCATTCAAAACACATGTTGGATTGAAAAGACATATTACTGTAAACCATGGTGATCCGTTTGTCGATGATCCAGATGATCCACTATCATTGCATTTATGCATTTGTTGCGGAGAACCAAAGGATTCTGCACATACGATTGGCGACTTCAAGTGCCCAGATTGCGACAAACTTTTCCTGGAAGAAAAATACATGGCCAGACACTCTTGCATCGATCAtccaaaaaacaataaatacgAATGCTACGAGTGTGcgaaaattttcaaagataaacCCCAACTGTTGGATCACATTCGCATCCATCCATTGAAAATTGTCAAATGCGATGGTTGCAATCGAGAATTCACCAGAAAGTACCACCTGGATAGACACATCGATCATACGGGCTGCATGGGTAGTCCAAGAAAAGCCTTCGACTGCCATGTTTGTAAACGTTATTTTACCCGCAAAGATAACTTGGCCGAACATCTGAGAATGCATGCCGGACAGgtgaagaaaaagaaaacattcatCTGCGAATATTGCAACAGAGAATTTCAAGGTTTAAATTTGCTCACCATTCACATGAGAACTCATACAGGCGAAAAACCGTATGCCTGCGATCTATGTCCTAAGAAATTCCCCTCCAGTGGTGCCATGAAGAAACATCGACGAATGCATACAGGAGAGAAGCCCTATAAGTGTTGCGAGtgtgaCAAACGCTTCGCAGCCAAGGAGACATTAAATCGTCATGCCCGCATCCATACGGGCGATAAACCGCACCGTTGCCATTTTTGTGGaaaagcattcattcaaccGTCTCAGCTGAGGGCGCATATATTCCATCATACTGGCGAAAATGGTTACACATGTGAATATTGTGGTATGGCATTCAATAGGCGACTACGATTAACCACTCACATCAAATTCATGCACGAAGGTGCCAAGCCGTTGCCTTGCAGTGAATGTGACAAGACATTCTTCCGCAAAGAGGATGTTCAAAGACATATGCTCTGTCATACTGGAGAAAAACCTTTTGAATGTGATGAGTGCTCCAAAAGATTCTCAGTCAAGTCATCATTGAAAATTCACAAGCTCACTCATCGCAAAGAAGCCCCATGCAGCTGTGCTACTTGCGGCAGAGCCTTCATACGAAAAGACTGTCTCATGCGTCACATCCGTGCTCGGCATCGCGATGTACTCGAAGATATTGTAGCGAATGCGGAAAAGAAACGATTGCAACAACAACTGCTCAAGGCGGCCACAGATGCTGCAGCCTGTCAGAAATTGTTGACCGAGAATGTCATTTGGAATGAACTAACACTAACGGAATCCATCAAAGAGCTGCTAACTCTGTTGGTTGATGATGATTGTCTCGAAGAGTTTGGTTATCCGGATACACCCGTCGATAAAGTTTTGGACTGTGTTATCAAACGTTGTGGACATAAGCCAGCTTCGGAGGAAGATTTCGATTACATTGGCAGAATTAGAGAAAATGCTAAATTACTTTTTACTGTGGTGATAGATGATGAAGCAGTCAAGGAACTATTGAATAATCAAACTGTCGATGAAGTCATCCTGCATGTTTTACGGTTGGCAAAGAAGCAAAATAACTAG
- Protein Sequence
- MEDINEKNVKSEIKLEQVVHEVENEEFTEVHNVVLENVEIEENAQEVPIIVNDYPTTDSDGNLKITTVQDNVVRTFIIDQSEYQAYEQNGQEILYEAADEHGNTIQYVIEEADYDEESSQSGDATEVQYIFENSDNIEESEIVDDPDDQMDDDNDPSRMSVESSQDEDYKMEEDGEEEHDDVEEDVGDDDDKDPSYSVDEEDNGNIQCDVCLKSFKTHVGLKRHITVNHGDPFVDDPDDPLSLHLCICCGEPKDSAHTIGDFKCPDCDKLFLEEKYMARHSCIDHPKNNKYECYECAKIFKDKPQLLDHIRIHPLKIVKCDGCNREFTRKYHLDRHIDHTGCMGSPRKAFDCHVCKRYFTRKDNLAEHLRMHAGQVKKKKTFICEYCNREFQGLNLLTIHMRTHTGEKPYACDLCPKKFPSSGAMKKHRRMHTGEKPYKCCECDKRFAAKETLNRHARIHTGDKPHRCHFCGKAFIQPSQLRAHIFHHTGENGYTCEYCGMAFNRRLRLTTHIKFMHEGAKPLPCSECDKTFFRKEDVQRHMLCHTGEKPFECDECSKRFSVKSSLKIHKLTHRKEAPCSCATCGRAFIRKDCLMRHIRARHRDVLEDIVANAEKKRLQQQLLKAATDAAACQKLLTENVIWNELTLTESIKELLTLLVDDDCLEEFGYPDTPVDKVLDCVIKRCGHKPASEEDFDYIGRIRENAKLLFTVVIDDEAVKELLNNQTVDEVILHVLRLAKKQNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -