Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293826.1:1955061-1956706[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.8e-07 2.7e-05 25.9 0.8 2 23 146 167 145 167 0.98

2 11 2.5e-07 3.9e-05 25.4 0.5 1 23 173 195 173 195 0.98

3 11 0.0046 0.71 12.0 1.1 3 23 203 223 201 224 0.95

4 11 1.7e-06 0.00026 22.8 2.1 2 23 275 296 274 296 0.96

5 11 1.3e-05 0.0019 20.0 1.4 1 23 302 324 302 324 0.97

6 11 3.5e-06 0.00054 21.8 1.1 1 23 330 352 330 352 0.98

7 11 0.00015 0.024 16.6 7.7 1 23 361 383 361 383 0.96

8 11 0.00022 0.034 16.1 3.9 2 23 404 425 403 425 0.96

9 11 2e-06 0.00031 22.5 1.6 1 23 431 453 431 453 0.98

10 11 6.9e-08 1.1e-05 27.1 1.4 1 23 459 481 459 481 0.97

11 11 3.2e-05 0.005 18.7 2.7 1 23 487 509 487 509 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.8e-07	2.7e-05	25.9	0.8	2	23	146	167	145	167	0.98
2	11	2.5e-07	3.9e-05	25.4	0.5	1	23	173	195	173	195	0.98
3	11	0.0046	0.71	12.0	1.1	3	23	203	223	201	224	0.95
4	11	1.7e-06	0.00026	22.8	2.1	2	23	275	296	274	296	0.96
5	11	1.3e-05	0.0019	20.0	1.4	1	23	302	324	302	324	0.97
6	11	3.5e-06	0.00054	21.8	1.1	1	23	330	352	330	352	0.98
7	11	0.00015	0.024	16.6	7.7	1	23	361	383	361	383	0.96
8	11	0.00022	0.034	16.1	3.9	2	23	404	425	403	425	0.96
9	11	2e-06	0.00031	22.5	1.6	1	23	431	453	431	453	0.98
10	11	6.9e-08	1.1e-05	27.1	1.4	1	23	459	481	459	481	0.97
11	11	3.2e-05	0.005	18.7	2.7	1	23	487	509	487	509	0.97

Sequence Information

Coding Sequence: atggGAAACTTTGATGACCTGAAGCTTATCGATTTCCGTAATATTTGTCGAATTTGCTTACAGACTGGAGATTTAATACAATTATGTCAAGTAGAAGCAAATGTGCTTTCAGTATtaagtttatttaaattacAGGAAATTCATTTGAATGATTTACCTCAAAGTATTTGCCAACAATGTATCGAATATCTTAGAAATATTTGTACGTTTATTGAAACTTACATAACAAATACTAAACGTCTATGTGATGCGTTGgctgaaaaaaaatctcatctACCAGTAGAGTTCAATAATCAAGATGAAGAAGATACTAATTCGTACATTAAGGaactgaaaattacaaacttAGAAGATGATCATGTTGAAAGAACTGATTCAGATACCAATGCAGATCAATTAAATAATAGTTGTGCAAAAAAATCGAGAAGAAACGTGAAATGTGACATCTGTAGAAAAGTATTTTCAAGAACTAGTGGACTGCAGCGTCACATGAAAATTCATTTAGGCGTAAAACCTTTCAAATGTCCAATCTGCGGTAAAACATTTGTGGAAAAGGCTACACTCAACCGACATAATCTAACGCATTCAGgTAGTAAACCGTTTGGTTGCAGCCTTTGTGGCAAATTTGCAAGAAGAAAAGATCAAATAGCTgaacatatccagaaacatcATCCAAATGTGAAAGATGTCGATTTTGTCATAATTCAACAAGATGATATGCAAGAGAAAACTGGCGGTGAAAACGCTACAGAAGAGATTGATGAGAAAGTCGACAACAAACCGTCTGAATTAACAAGAACGAAAAAACGTGTCGAAATTTGCCAATGCACTCTATGTGGCAAAGTCTTCCAACGCCGTGACTATTTGAAAAATCACATGGCCATCCATGCTGCCATAAAGCCGTACCAGTGTGCGATATGCAGTAAAGGCTTCACACAACGCCATGCTCTTACCAGACACAATCTGGTGCATACCAAGGAGCGACCATTTCAGTGCAATTTGTGCGGCAAAACGTTTACGCGCAAAGAAATCCTCACCGAACACATCAAAAATCACGATTCTAATGGTGGTAGTAAACGTTATCTATGTTTCCATTGTGGCAAATGCTTCGAAAACAAATTCTACCTGTCCAAGCATTTGCGCTACCATTTGGTATTGGGCGGAGCGGCAAATCGGAAACAGACCAAGTCTAGCAATGGGAGAAAATGCATATGTCCACATTGTGGCAAGCAGTTGCATTCGCCCTCGTATCTCAAAGTGCATCTTTTAACGCATTCCGGTGAGAAACCGTTCGAATGTAACATTTGCGGCAACAGGTTCACCGTTCAAAGTTCATTGAAACATCATTTGAATATCCATAAGGGTATCAAACCGTATCCGTGCAAGTTGTGTGATAAAGTATTTAGAACGTCGAGTTCATTGAAAAAACATCAATTGTTACATAGCGGTGAGAGGCCGTACAAATGTACAAGTTGTAATAAAGCTTTTATTAGAGGTAGTCATCTGAAAAGACACTCTCTCATccattga
Protein Sequence: MGNFDDLKLIDFRNICRICLQTGDLIQLCQVEANVLSVLSLFKLQEIHLNDLPQSICQQCIEYLRNICTFIETYITNTKRLCDALAEKKSHLPVEFNNQDEEDTNSYIKELKITNLEDDHVERTDSDTNADQLNNSCAKKSRRNVKCDICRKVFSRTSGLQRHMKIHLGVKPFKCPICGKTFVEKATLNRHNLTHSGSKPFGCSLCGKFARRKDQIAEHIQKHHPNVKDVDFVIIQQDDMQEKTGGENATEEIDEKVDNKPSELTRTKKRVEICQCTLCGKVFQRRDYLKNHMAIHAAIKPYQCAICSKGFTQRHALTRHNLVHTKERPFQCNLCGKTFTRKEILTEHIKNHDSNGGSKRYLCFHCGKCFENKFYLSKHLRYHLVLGGAANRKQTKSSNGRKCICPHCGKQLHSPSYLKVHLLTHSGEKPFECNICGNRFTVQSSLKHHLNIHKGIKPYPCKLCDKVFRTSSSLKKHQLLHSGERPYKCTSCNKAFIRGSHLKRHSLIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -