Basic Information

Insect: Crioceris asparagi
Gene Symbol: -
Assembly: GCA_958507055.1
Location: OY293828.1:86670382-86672392[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0008 0.12 14.4 4.0 2 23 21 42 20 42 0.94

2 16 0.32 49 6.2 2.2 1 23 47 70 47 70 0.96

3 16 3.7e-06 0.00056 21.7 1.0 1 23 76 99 76 99 0.97

4 16 0.00041 0.063 15.3 0.6 2 23 103 125 102 125 0.95

5 16 0.007 1.1 11.4 3.0 1 23 140 162 140 162 0.95

6 16 0.0053 0.82 11.8 3.8 1 23 167 190 167 190 0.97

7 16 8e-06 0.0012 20.6 1.4 1 23 196 219 196 219 0.97

8 16 0.0014 0.21 13.6 0.7 2 23 223 245 222 245 0.95

9 16 0.0003 0.046 15.7 3.3 2 23 252 274 251 274 0.94

10 16 5.2e-05 0.008 18.1 1.5 1 23 280 303 280 303 0.98

11 16 3.3e-05 0.0051 18.7 3.2 1 23 308 330 308 330 0.98

12 16 0.00026 0.041 15.9 4.1 2 23 339 360 338 360 0.98

13 16 8.8e-06 0.0014 20.5 2.5 3 23 369 389 368 389 0.98

14 16 1.5e-06 0.00023 23.0 1.7 1 23 395 417 395 417 0.97

15 16 1.1e-05 0.0016 20.3 1.2 1 23 423 445 423 445 0.98

16 16 0.00083 0.13 14.3 1.5 1 23 451 473 451 473 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0008	0.12	14.4	4.0	2	23	21	42	20	42	0.94
2	16	0.32	49	6.2	2.2	1	23	47	70	47	70	0.96
3	16	3.7e-06	0.00056	21.7	1.0	1	23	76	99	76	99	0.97
4	16	0.00041	0.063	15.3	0.6	2	23	103	125	102	125	0.95
5	16	0.007	1.1	11.4	3.0	1	23	140	162	140	162	0.95
6	16	0.0053	0.82	11.8	3.8	1	23	167	190	167	190	0.97
7	16	8e-06	0.0012	20.6	1.4	1	23	196	219	196	219	0.97
8	16	0.0014	0.21	13.6	0.7	2	23	223	245	222	245	0.95
9	16	0.0003	0.046	15.7	3.3	2	23	252	274	251	274	0.94
10	16	5.2e-05	0.008	18.1	1.5	1	23	280	303	280	303	0.98
11	16	3.3e-05	0.0051	18.7	3.2	1	23	308	330	308	330	0.98
12	16	0.00026	0.041	15.9	4.1	2	23	339	360	338	360	0.98
13	16	8.8e-06	0.0014	20.5	2.5	3	23	369	389	368	389	0.98
14	16	1.5e-06	0.00023	23.0	1.7	1	23	395	417	395	417	0.97
15	16	1.1e-05	0.0016	20.3	1.2	1	23	423	445	423	445	0.98
16	16	0.00083	0.13	14.3	1.5	1	23	451	473	451	473	0.98

Sequence Information

Coding Sequence: ATGCCTAGCGCACTCGATCGGACGTTCAACACTAATGAATTGGAACACAAAGATGAACTCAAATGTCATCAATGCAATACAAATTTTCCAACATTCAGCAAGTTAAAGAAACATTTAGTTTACcacaggaaaaaaatattttcatgtgatTTGTGCGAAAATAAATACAGAGCTGAACCTCATCTGCTGCACCACAAGAAAGTCGTGCATCTCAAGCAGAACCTGTATGCATGCAATCAATGCGAAAAAACTTTTGGATACAGAAATAGTTTACGTCGACACATTCAAACGATACACGTGGAGACAGAATGCCAATATTGCAGTAAAAAATATCAGGACAAAATACAGCTGGAGGTCCATATAAAACAAGATCATCCTTCTTCATTTTCCAGGACAGATTTAGAACACAAAGATGAACATAAGTGTAATCAATGCAATGCAAACTTTGCAACATTCATAAAGTTAAAGAAGCATTTAGTTTATCacaaagagaaaatattttcatgtgatTTGTGCGAAAAGAAATACCGTGTTGAACATCAACTGTTACACCACAAAAAAGTCGTGCATCTCAAACAGAACCCGTATTCATGTAATCAATGTAACGAAACTTTTGGATACAGAAAAAGTTTACGTCGACACATTCAATCGATACACGTAGAGACAGAATGCCAATATTGCAGAAGAAAATATCAAGACAAAATACAGCTTGAAGTCCATATAAAACAAGATCATCCACtatcacaaaaaaatcaatgcCCACATTGCAATCAAGAATTTCAACGTAAGAGCCATATGAGAGAACATATTGATAATGtacatttcaataaatacaattataaatgtgaaagttgTAACAAGGGCTTCAATTTTGAAAGCAAGCTGAAACTTCATCAAAAGGTAGAACATGACGGATACAGATTTACTTGTGAGGAATGTAAAAAGTCTTTCAAAGATGAACGCCGTTATAAGAAACATTTGGAAACtcataaacaaacaaataattcCACCATTCAATGTGAAGTGTGCTCCAAGGAATACCGAACAAAGTGCAATTACGATCGTCATAGAAGAACCCATGAGGGATCAGTTATTGAGAATATTTGTCACATGTGTGGTAAGAATTTCTTCTCAACATCTGCTCTCAAAGATCATTTGAGGACACATACTGGTGAGAAACCGCACATTTGTGAATACTGTGACAAGAGCTTTGTGAAGCGATATGCGCTAACTGTGCACAGAAGGATTCACACCAATGAGAGGCCGTATACTTGTGAATTTTGTGATAAAACTTTCAGTCAGCGACCATCGTACCTTGTTCATGTAAGGAATCATACGGGTGAGAAACCCTATGAATGCCTTATCTGTTTGAAGAGATTTCTCACCAAGAGTCTATTGAATAATCATCTGAAATATCATGGAAGTGAATAG
Protein Sequence: MPSALDRTFNTNELEHKDELKCHQCNTNFPTFSKLKKHLVYHRKKIFSCDLCENKYRAEPHLLHHKKVVHLKQNLYACNQCEKTFGYRNSLRRHIQTIHVETECQYCSKKYQDKIQLEVHIKQDHPSSFSRTDLEHKDEHKCNQCNANFATFIKLKKHLVYHKEKIFSCDLCEKKYRVEHQLLHHKKVVHLKQNPYSCNQCNETFGYRKSLRRHIQSIHVETECQYCRRKYQDKIQLEVHIKQDHPLSQKNQCPHCNQEFQRKSHMREHIDNVHFNKYNYKCESCNKGFNFESKLKLHQKVEHDGYRFTCEECKKSFKDERRYKKHLETHKQTNNSTIQCEVCSKEYRTKCNYDRHRRTHEGSVIENICHMCGKNFFSTSALKDHLRTHTGEKPHICEYCDKSFVKRYALTVHRRIHTNERPYTCEFCDKTFSQRPSYLVHVRNHTGEKPYECLICLKRFLTKSLLNNHLKYHGSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -